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Click the UGent logo to retrieve publications of Pieter De Bleser in the UGent bibliography

Scheenstra, MR, Martinez-Botia, P, Acebes-Huerta, A, Brouwer, RWW, Caballero-Sanchez, N, Gillemans, N, De Bleser, P, Nota, B, De Cuyper, IM, Salunkhe, V, Woltman, AM, van de Laar, L, Rijkers, E, Demmers, JAA, van, IWFJ, Philipsen, S, van den Berg, TK, Kuijpers, TW, Gutierrez, L.
Comparison of the PU.1 transcriptional regulome and interactome in human and mouse inflammatory dendritic cells
J Leukoc Biol , in press, 2020. (Epub 2020 Dec 2)

Bonnardel, J, T'Jonck, W, Gaublomme, D, Browaeys, R, Scott, CL, Martens, L, Vanneste, B, De Prijck, S, Nedospasov, SA, Kremer, A, Van Hamme, E, Borghgraef, P, Toussaint, W, De Bleser, P, Mannaerts, I, Beschin, A, van Grunsven, LA, Lambrecht, BN, Taghon, T, et al..
Stellate Cells, Hepatocytes, and Endothelial Cells Imprint the Kupffer Cell Identity on Monocytes Colonizing the Liver Macrophage Niche
Immunity 51, 638-654, 2019. (Epub 2019 Sep 24)

Sarcar, S, Tulalamba, W, Rincon, MY, Tipanee, J, Pham, HQ, Evens, H, Boon, D, Samara-Kuko, E, Keyaerts, M, Loperfido, M, Berardi, E, Jarmin, S, In't Veld, P, Dickson, G, Lahoutte, T, Sampaolesi, M, De Bleser, P, VandenDriessche, T, Chuah, MK.
Next-generation muscle-directed gene therapy by in silico vector design
Nat Commun 10, 492, 2019. (Epub 2019 Feb 1)

Tibbitt, CA, Stark, JM, Martens, L, Ma, J, Mold, JE, Deswarte, K, Oliynyk, G, Feng, X, Lambrecht, BN, De Bleser, P, Nylen, S, Hammad, H, Arsenian Henriksson, M, Saeys, Y, Coquet, JM.
Single-Cell RNA Sequencing of the T Helper Cell Response to House Dust Mites Defines a Distinct Gene Expression Signature in Airway Th2 Cells
Immunity 51, 169-184, 2019. (Epub 2019 Jun 20)

Cambre, I, Gaublomme, D, Burssens, A, Jacques, P, Schryvers, N, De Muynck, A, Meuris, L, Lambrecht, S, Carter, S, de Bleser, P, Saeys, Y, Van Hoorebeke, L, Kollias, G, Mack, M, Simoens, P, Lories, R, Callewaert, N, Schett, G, Elewaut, D.
Mechanical strain determines the site-specific localization of inflammation and tissue damage in arthritis
Nat Commun 9, 4613, 2018. (Epub 2018 Nov 5)

Scott, CL, T'Jonck, W, Martens, L, Todorov, H, Sichien, D, Soen, B, Bonnardel, J, De Prijck, S, Vandamme, N, Cannoodt, R, Saelens, W, Vanneste, B, Toussaint, W, De Bleser, P, Takahashi, N, Vandenabeele, P, et al., Lambrecht, BN, De Baetselier, P, Milling, SWF, Van Ginderachter, JA, Malissen, B, Berx, G, Beschin, A, Saeys, Y, Guilliams, M.
The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages
Immunity 49, 312-325, 2018. (Epub 2018 Jul 31)

Kreft, L, Soete, A, Hulpiau, P, Botzki, A, Saeys, Y, De Bleser, P.
ConTra v3: a tool to identify transcription factor binding sites across species, update 2017
Nucleic Acids Res 45, W490-W494, 2017. (Epub 2017 May 4)

Folmsbee, SS, Wilcox, DR, Tyberghein, K, De Bleser, P, Tourtellotte, WG, van Hengel, J, van Roy, F, Gottardi, CJ.
alphaT-catenin in restricted brain cell types and its potential connection to autism
J Mol Psychiatry 4, 2, 2016. (Epub 2016 Jun 21)

Scheenstra, MR, De Cuyper, IM, Branco-Madeira, F, de Bleser, P, Kool, M, Meinders, M, Hoogenboezem, M, Mul, E, Wolkers, MC, Salerno, F, Nota, B, Saeys, Y, Klarenbeek, S, van Ijcken, WF, Hammad, H, Philipsen, S, van den Berg, TK, Kuijpers, TW, Lambrecht, BN, et al..
GATA1-Deficient Dendritic Cells Display Impaired CCL21-Dependent Migration toward Lymph Nodes Due to Reduced Levels of Polysialic Acid
J Immunol 197, 4312-4324, 2016. (Epub 2016 Nov 4)

Trypsteen, W, Mohammadi, P, Van Hecke, C, Mestdagh, P, Lefever, S, Saeys, Y, De Bleser, P, Vandesompele, J, Ciuffi, A, Vandekerckhove, L, De Spiegelaere, W.
Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay
Sci Rep 6, 36111, 2016. (Epub 2016 Oct 26)

Chuah, MK, Petrus, I, De Bleser, P, Le Guiner, C, Gernoux, G, Adjali, O, Nair, N, Willems, J, Evens, H, Rincon, MY, Matrai, J, Di Matteo, M, Samara-Kuko, E, Yan, B, Acosta-Sanchez, A, Meliani, A, Cherel, G, Blouin, V, Christophe, O, Moullier, P, Mingozzi, F, Vanden Driessche, V.
Liver-specific transcriptional modules identified by genome-wide in silico analysis enable efficient gene therapy in mice and non-human primates
Mol Ther 22, 1605-1613, 2014. (Epub 2014 Jun 23)

Nair, N, Rincon, MY, Evens, H, Sarcar, S, Dastidar, S, Samara-Kuko, E, Ghandeharian, O, Viecelli, HM, Thony, B, De Bleser, P, Vandendriessche, T, Chuah, MK.
Computationally designed liver-specific transcriptional cis-regulatory modules and hyper-functional factor IX improve liver-targeted gene therapy for hemophilia B
Blood 123, 3195-3199, 2014. (Epub 2014 Mar 17)

Rincon, MY, Sarcar, S, Danso-Abeam, D, Keyaerts, M, Matrai, J, Samara-Kuko, E, Acosta-Sanchez, A, Athanasopoulos, T, Dickson, G, Lahoutte, T, De Bleser, P, VandenDriessche, T, Chuah, MK.
Genome-wide computational analysis reveals cardiomyocyte-specific transcriptional cis-regulatory motifs that enable efficient cardiac gene therapy
Mol Ther 23, 43-52, 2014. (Epub 2014 Sep 8)

Broos, S, Soete, A, Hooghe, B, Moran, R, van Roy, F, De Bleser, P.
PhysBinder: improving the prediction of transcription factor binding sites by flexible inclusion of biophysical properties
Nucleic Acids Res 41, W531-534, 2013. (Epub 2013 Apr 24)

Hooghe, B, Broos, S, van Roy, F, De Bleser, P.
A flexible integrative approach based on random forest improves prediction of transcription factor binding sites
Nucleic Acids Res 40, e106, 2012. (Epub 2012 Apr 5)

Broos, S, Hulpiau, P, Galle, J, Hooghe, B, Van Roy, F, De Bleser, P.
ConTra v2: a tool to identify transcription factor binding sites across species, update 2011
Nucl Acids Res 39, W74-W78, 2011. (Epub 2011 May 16)

Schepens, B, Ibanez, LI, De Baets, S, Hultberg, A, Bogaert, P, De Bleser, P, Vervalle, F, Verrips, T, Melero, J, Vandevelde, W, Vanlandschoot, P, Saelens, X.
Nanobodies(R) specific for Respiratory Syncytial Virus fusion protein protect against infection by inhibition of fusion
J Infect Dis 204, 1692-1701, 2011. (Epub 2011 Oct 12)

Laukens, D, Waeytens, A, De Bleser, P, Cuvelier, C, De Vos, M.
Human metallothionein expression under normal and pathological conditions: mechanisms of gene regulation based on in silico promoter analysis
Crit Rev Eukaryot Gene Expr 19, 301-317, 2009. (Epub ---)

Daenen, F, van Roy, F, De Bleser, PJ.
Low nucleosome occupancy is encoded around functional human transcription factor binding sites
BMC Genomics 9, 332, 2008. (Epub 2008 Jul 15)

Griffith, OL, Montgomery, SB, Bernier, B, Chu, B, Kasaian, K, Aerts, S, Mahony, S, Sleumer, MC, Bilenky, M, Haeussler, M, Griffith, M, Gallo, SM, Giardine, B, Hooghe, B, Van Loo, P, Blanco, E, Ticoll, A, Lithwick, S, Portales-Casamar, E, (...), De Bleser, P, et al..
ORegAnno: an open-access community-driven resource for regulatory annotation
Nucleic Acids Res 36, D107-113, 2008. (Epub 2007 Nov 15)

Hooghe, B, Hulpiau, P, van Roy, F, De Bleser, P.
ConTra: a promoter alignment analysis tool for identification of transcription factor binding sites across species
Nucleic Acids Res 36, W128-132 , 2008. (Epub 2008 May 5)

De Bleser, PJ, Hooghe, B, Vlieghe, D, van Roy, F.
A distance difference matrix approach to the identification of transcription factors that regulate differential gene expression
Genome Biology 8, R83, 2007. (Epub 2007 May 16)

Vlieghe, D, Sandelin, A, De Bleser, P, Vleminckx, K, van Roy, F, Wasserman, W, Lenhard, B.
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles
Nucl Acids Res 34, D95-D97, 2006. (Epub 2006 Jan 1)

Ameloot, P, Fiers, W, De Bleser, P, Ware, CF, Vandenabeele, P, Brouckaert, P.
Identification of tumor necrosis factor (TNF) amino acids crucial for binding to the murine p75 TNF receptor and construction of receptor-selective mutants
J Biol Chem 276, 37426-37430, 2001. (Epub 2001 Jul 11)

Niki, T, Schuppan, D, de Bleser, PJ, Vrijsen, R, Pipeleers-Marichal, M, Beyaert, R, Wisse, E, Geerts, A.
Dexamethasone alters messenger RNA levels but not synthesis of collagens, fibronectin, or laminin by cultured rat fat-storing cells
Hepatology 23, 1673-1681, 1996. (Epub ---)

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