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Publications from this research unit

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Corneillie, S, De Storme, N, Van Acker, R, Fangel, JU, De Bruyne, M, De Rycke, RM, Geelen, DNV, Willats, WGT, Vanholme, B, Boerjan, WA.
Polyploidy affects plant growth and alters cell wall composition
Plant Physiol 179, 74-87, 2019. (Epub 2018 Oct 9)

Dejonghe, W, Sharma, I, Denoo, B, De Munck, S, Lu, Q, Mishev, K, Bulut, H, Mylle, E, De Rycke, R, Vasileva, M, Savatin, DV, Nerinckx, W, Staes, A, Drozdzecki, A, Audenaert, D, Yperman, K, Madder, A, Friml, J, Van Damme, D, et al..
Disruption of endocytosis through chemical inhibition of clathrin heavy chain function
Nat Chem Biol , in press, 2019. (Epub 2019 Apr 22)

de Vasconcelos, NM, Van Opdenbosch, N, Van Gorp, H, Parthoens, E, Lamkanfi, M.
Single-cell analysis of pyroptosis dynamics reveals conserved GSDMD-mediated subcellular events that precede plasma membrane rupture
Cell Death Differ 26, 146-161, 2019. (Epub 2018 Apr 17)

de Vasconcelos, NM, Vliegen, G, Goncalves, A, De Hert, E, Martin-Perez, R, Van Opdenbosch, N, Jallapally, A, Geiss-Friedlander, R, Lambeir, AM, Augustyns, K, Van Der Veken, P, De Meester, I, Lamkanfi, M.
DPP8/DPP9 inhibition elicits canonical Nlrp1b inflammasome hallmarks in murine macrophages
Life Sci Alliance 2, e201900313, 2019. (Epub 2019 Feb 4)

Krols, M, Asselbergh, B, De Rycke, R, De Winter, V, Seyer, A, Muller, FJ, Kurth, I, Bultynck, G, Timmerman, V, Janssens, S.
Sensory neuropathy-causing mutations in ATL3 affect ER-mitochondria contact sites and impair axonal mitochondrial distribution
Hum Mol Genet 28, 615627, 2019. (Epub 2018 Oct 18)

Lippens, S, D'Enfert, C, Farkas, L, Kehres, A, Korn, B, Morales, M, Pepperkok, R, Premvardhan, L, Schlapbach, R, Tiran, A, Meder, D, Van Minnebruggen, G.
One step ahead: Innovation in core facilities
EMBO Rep , e48017, 2019. (Epub 2019 Mar 14)

Oyarce, P, De Meester, B, Fonseca, F, de Vries, L, Goeminne, G, Pallidis, A, De Rycke, R, Tsuji, Y, Li, Y, Van den Bosch, S, Sels, B, Ralph, J, Vanholme, R, Boerjan, W.
Introducing curcumin biosynthesis in Arabidopsis enhances lignocellulosic biomass processing
Nat Plants 5, 225-237, 2019. (Epub 2019 Jan 28)

Slowicka, K, Serramito-Gomez, I, Boada-Romero, E, Martens, A, Sze, M, Petta, I, Vikkula, HK, De Rycke, R, Parthoens, E, Lippens, S, Savvides, SN, Wullaert, A, Vereecke, L, Pimentel-Muinos, FX, van Loo, G.
Physical and functional interaction between A20 and ATG16L1-WD40 domain in the control of intestinal homeostasis
Nat Commun 10, 1834, 2019. (Epub 2019 Apr 23)

Syx, D, De Wandele, I, Symoens, S, De Rycke, R, Hougrand, O, Voermans, N, De Paepe, A, Malfait, F.
Bi-allelic AEBP1 mutations in two patients with Ehlers-Danlos syndrome
Hum Mol Genet , in press, 2019. (Epub 2019 Jan 22)

Van Guyse, JFR, de la Rosa, VR, Lund, R, De Bruyne, M, De Rycke, R, Filippov, SK, Hoogenboom, R.
Striking Effect of Polymer End-Group on C-60 Nanoparticle Formation by High Shear Vibrational Milling with Alkyne-Functionalized Poly(2-oxazoline)s
Acs Macro Letters 8, 172-176, 2019. (Epub 2019 Jan 23)

Ballegeer, M, Van Looveren, K, Timmermans, S, Eggermont, M, Vandevyver, S, Thery, F, Dendoncker, K, Souffriau, J, Vandewalle, J, Van Wyngene, L, De Rycke, R, Takahashi, N, Vandenabeele, P, Tuckermann, J, Reichardt, HM, Impens, F, Beyaert, R, De Bosscher, K, Vandenbroucke, RE, et al..
Glucocorticoid receptor dimers control intestinal STAT1 and TNF-induced inflammation in mice
J Clin Invest 128, 3265-3279, 2018. (Epub 2018 May 10)

Bhosale, R, Boudolf, V, Cuevas, F, Lu, R, Eekhout, T, Hu, Z, Van Isterdael, G, Lambert, GM, Xu, F, Nowack, MK, Smith, RS, Vercauteren, I, De Rycke, R, Storme, V, Beeckman, T, Larkin, JC, Kremer, A, Hofte, H, Galbraith, DW, et al..
A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation
Plant Cell 30, 2330-2351, 2018. (Epub 2018 Oct)

De Bruyne, M, Hoste, L, Bogaert, DJ, Van den Bossche, L, Tavernier, SJ, Parthoens, E, et al., Lambrecht, BN, van Daele, S, Alves de Medeiros, AK, Brochez, L, Beyaert, R, De Baere, E, Puel, A, Casanova, JL, Goffard, JC, Savvides, SN, et al., Staal, J, et al.
A CARD9 Founder Mutation Disrupts NF-kappaB Signaling by Inhibiting BCL10 and MALT1 Recruitment and Signalosome Formation
Front Immunol 9, 2366, 2018. (Epub 2018 Oct 31)

Delvaeye, T, Wyffels, L, Deleye, S, Lemeire, K, Goncalves, A, Decrock, E, Staelens, S, Leybaert, L, Vandenabeele, P, Krysko, DV.
Noninvasive whole-body imaging of phosphatidylethanolamine as a cell death marker using (99m)Tc-duramycin during TNF-induced SIRS
J Nucl Med 59, 1140-1145, 2018. (Epub 2018 Feb 1)

De Samber, B, Meul, E, Laforce, B, De Paepe, B, Smet, J, De Bruyne, M, De Rycke, R, Bohic, S, Cloetens, P, Van Coster, R, Vandenabeele, P, Vanden Berghe, T.
Nanoscopic X-ray fluorescence imaging and quantification of intracellular key-elements in cryofrozen Friedreich's ataxia fibroblasts
PLoS One 13, e0190495, 2018. (Epub 2018 Jan 17)

D'Hondt, S, Guillemyn, B, Syx, D, Symoens, S, De Rycke, R, Vanhoutte, L, Toussaint, W, Lambrecht, BN, De Paepe, A, Keene, DR, Ishikawa, Y, Bachinger, HP, Janssens, S, Bertrand, MJM, Malfait, F.
Type III collagen affects dermal and vascular collagen fibrillogenesis and tissue integrity in a mutant Col3a1 transgenic mouse model
Matrix Biol 70, 72-83, 2018. (Epub 2018 Mar 15)

Kania, U, Nodzynski, T, Lu, Q, Hicks, GR, Nerinckx, W, Mishev, K, Peurois, F, Cherfils, J, De Rycke, RM, Grones, P, Robert, S, Russinova, E, Friml, J.
Endosidin 4 inhibitor targets the SEC7 domain-type ARF-GEFs and interferes with subcellular trafficking in eukaryotes
Plant Cell 30, 2553-2572, 2018. (Epub 2018 Jul 17)

Kip, E, Staal, J, Verstrepen, L, Tima, HG, Terryn, S, Romano, M, Lemeire, K, Suin, V, Hamouda, A, Kalai, M, Beyaert, R, Van Gucht, S.
MALT1 controls attenuated rabies virus by inducing early inflammation and T cell activation in the brain
J Virol 92, e02029-17, 2018. (Epub 2018 Jan 26)

Krols, M, Detry, S, Asselbergh, B, Almeida-Souza, L, Kremer, A, Lippens, S, De Rycke, R, De Winter, V, Muller, FJ, Kurth, I, McMahon, HT, Savvides, SN, Timmerman, V, Janssens, S.
Sensory-Neuropathy-Causing Mutations in ATL3 Cause Aberrant ER Membrane Tethering
Cell Rep 23, 2026-2038, 2018. (Epub 2018 May 15)

Liu, J, Xiong, R, Brans, T, Lippens, S, Parthoens, E, Zanacchi, FC, Magrassi, R, Singh, SK, Kurungot, S, Szunerits, S, Bove, H, Ameloot, M, Fraire, JC, Teirlinck, E, Samal, SK, De Rycke, R, Houthaeve, G, De Smedt, SC, Boukherroub, R, et al..
Repeated photoporation with graphene quantum dots enables homogeneous labeling of live cells with extrinsic markers for fluorescence microscopy
Light Sci Appl 7, 47, 2018. (Epub 2018 Aug 8)

Mishev, K, Lu, Q, Denoo, B, et al., Dejonghe, W, Hullaert, J, De Rycke, RM, Boeren, S, Bretou, M, De Munck, S, Sharma, IS, Goodman, K, Kalinowska, K, Storme, V, Nguyen, L, Drozdzecki, A, Martins, S, Nerinckx, W, Audenaert, D, Savvides, S, et al..
Nonselective chemical inhibition of Sec7 domain-containing ARF GEFs in Arabidopsis
Plant Cell 30, 2573-2593, 2018. (Epub 2018 Jul 17)

Mylka, V, Deckers, J, Ratman, D, De Cauwer, L, Thommis, J, De Rycke, R, Impens, F, Libert, C, Tavernier, J, Vanden Berghe, W, Gevaert, K, De Bosscher, K.
The autophagy receptor SQSTM1/p62 mediates anti-inflammatory actions of the selective NR3C1/glucocorticoid receptor modulator compound A (CpdA) in macrophages
Autophagy 14, 2049-2064, 2018. (Epub 2018 Sep 14)

Plantamura, E, Dzutsev, A, Chamaillard, M, Djebali, S, Moudombi, L, Boucinha, L, Grau, M, Macari, C, Bauche, D, Dumitrescu, O, Rasigade, JP, Lippens, S, Plateroti, M, Kress, E, Cesaro, A, Bondu, C, Rothermel, U, Heikenwalder, M, Lina, G, et al..
MAVS deficiency induces gut dysbiotic microbiota conferring a proallergic phenotype
Proc Natl Acad Sci U S A 115, 10404-10409, 2018. (Epub 2018 Sep 24)

Roels, J, Aelterman, J, Luong, HQ, Lippens, S, Pizurica, A, Saeys, Y, Philips, W.
An overview of state-of-the-art image restoration in electron microscopy
J Microsc 271, 239-254, 2018. (Epub 2018 jun 8)

Souffriau, J, Eggermont, M, Van Ryckeghem, S, Van Looveren, K, Van Wyngene, L, Van Hamme, E, Vuylsteke, M, Beyaert, R, De Bosscher, K, Libert, C.
A screening assay for Selective Dimerizing Glucocorticoid Receptor Agonists and Modulators (SEDIGRAM) that are effective against acute inflammation
Sci Rep 8, 12894, 2018. (Epub 2018 Aug 27)

Staal, J, Driege, Y, Haegman, M, Borghi, A, Hulpiau, P, Lievens, L, Gul, IS, Sundararaman, S, Goncalves, A, Dhondt, I, Pinzon, JH, Braeckman, BP, Technau, U, Saeys, Y, van Roy, F, Beyaert, R.
Ancient Origin of the CARD-Coiled Coil/Bcl10/MALT1-Like Paracaspase Signaling Complex Indicates Unknown Critical Functions
Front Immunol 9, 1136, 2018. (Epub 2018 May 24)

Steeland, S, Gorle, N, Vandendriessche, C, Balusu, S, Brkic, M, Van Cauwenberghe, C, Van Imschoot, G, Van Wonterghem, E, De Rycke, R, Kremer, A, Lippens, S, Stopa, E, Johanson, CE, Libert, C, Vandenbroucke, RE.
Counteracting the effects of TNF receptor-1 has therapeutic potential in Alzheimer's disease
EMBO Mol Med 10, UNSP e8300, 2018. (Epub 2018 Feb 22)

Tavernier, S, Sass, A, De Bruyne, M, Baeke, F, De Rycke, R, Crabbe, A, Vandecandelaere, I, Van Nieuwerburgh, F, Coenye, T.
Decreased susceptibility of Streptococcus anginosus to vancomycin in a multispecies biofilm is due to increased thickness of the cell wall
J Antimicrob Chemother 73, 2323-2330, 2018. (Epub 2018 Jun 12)

Teirlinck, E, Xiong, R, Brans, T, Forier, K, Fraire, J, Van Acker, H, Matthijs, N, De Rycke, R, De Smedt, SC, Coenye, T, Braeckmans, K.
Laser-induced vapour nanobubbles improve drug diffusion and efficiency in bacterial biofilms
Nat Commun 9, 4518, 2018. (Epub 2018 Oct 30)

Teufelberger, AR, Nordengrun, M, Braun, H, Maes, T, De Grove, K, Holtappels, G, O'Brien, C, Provoost, S, Hammad, H, Goncalves, A, Beyaert, R, Declercq, W, Vandenabeele, P, Krysko, DV, Broker, BM, Bachert, C, Krysko, O.
The IL-33/ST2 axis is crucial in type 2 airway responses induced by Staphylococcus aureus-derived serine protease-like protein D.
J Allergy Clin Immunol 141, 549-559, 2018. (Epub 2017 May 19)

Urwyler-Rosselet, C, Tanghe, G, Leurs, K, Gilbert, B, De Rycke, R, De Bruyne, M, Lippens, S, Bartunkova, S, De Groote, P, Niessen, C, Haftek, M, Vandenabeele, P, Declercq, W.
Keratinocyte-specific ablation of RIPK4 allows epidermal cornification but impairs skin barrier formation
J Invest Dermatol 138, 1268-1278, 2018. (Epub 2018 Jan 6)

Van Damme, T, Pang, X, Guillemyn, B, Gulberti, S, Syx, D, De Rycke, R, Kaye, O, de Die-Smulders, CEM, Pfundt, R, Kariminejad, A, Nampoothiri, S, Pierquin, G, Bulk, S, Larson, AA, Chatfield, KC, Simon, M, Legrand, A, Gerard, M, Symoens, S, et al..
Biallelic B3GALT6 mutations cause spondylodysplastic Ehlers-Danlos syndrome
Hum Mol Genet 27, 3475-3487, 2018. (Epub 2018 Jun 20)

Vanslembrouck, B, Kremer, A, Pavie, B, van Roy, F, Lippens, S, van Hengel, J.
Three-dimensional reconstruction of the intercalated disc including the intercellular junctions by applying volume scanning electron microscopy
Histochem Cell Biol 149, 479-490, 2018. (Epub 2018 Mar 5)

Voet, S, Mc Guire, C, Hagemeyer, N, Martens, A, Schroeder, A, Wieghofer, P, Daems, C, Staszewski, O, Vande Walle, L, Jordao, MJC, Sze, M, Vikkula, HK, Demeestere, D, Van Imschoot, G, Scott, CL, Hoste, E, Goncalves, A, Guilliams, M, Lippens, S, Libert, C, Vandenbroucke, RE, et al., Lamkanfi, M, Prinz, M, van Loo, G.
A20 critically controls microglia activation and inhibits inflammasome-dependent neuroinflammation
Nat Commun 9, 2036, 2018. (Epub 2018 May 23)

Arendt, P, Miettinen, K, Pollier, J, De Rycke, R, Callewaert, N, Goossens, A.
An endoplasmic reticulum-engineered yeast platform for overproduction of triterpenoids
Metabolic Engineering 40, 165-175, 2017. (Epub 2017 Mar)

Blomme, J, Van Aken, O, Van Leene, J, Jegu, T, De Rycke, R, De Bruyne, M, Vercruysse, J, Nolf, J, Van Daele, T, De Milde, L, Vermeersch, M, des Francs-Small, CC, De Jaeger, G, Benhamed, M, Millar, AH, Inze, D, Gonzalez, N.
The Mitochondrial DNA-Associated Protein SWIB5 Influences mtDNA Architecture and Homologous Recombination
Plant Cell 29, 1137-1156, 2017. (Epub 2017 May)

Chemurot, M, De Smet, L, Brunain, M, De Rycke, R, de Graaf, DC.
Nosema neumanni n. sp. (Microsporidia, Nosematidae), a new microsporidian parasite of honeybees, Apis mellifera in Uganda
Eur J Protistol 61, 13-19, 2017. (Epub 2017 Jul 19)

Deng, L, Roose, K, Job, ER, De Rycke, R, Van Hamme, E, Goncalves, A, Parthoens, E, Cicchelero, L, Sanders, N, Fiers, W, Saelens, X.
Oral delivery of Escherichia coli persistently infected with M2e-displaying bacteriophages partially protects against influenza A virus
J Control Release 264, 55-65, 2017. (Epub 2017 Oct 28)

Estrada-Cuzcano, A, Martin, S, Chamova, T, Synofzik, M, Timmann, D, Holemans, T, Andreeva, A, Reichbauer, J, De Rycke, R, Chang, DI, van Veen, S, Samuel, J, Schols, L, Poppel, T, Mollerup Sorensen, D, Asselbergh, B, Klein, C, Zuchner, S, Jordanova, A, et al..
Loss-of-function mutations in the ATP13A2/PARK9 gene cause complicated hereditary spastic paraplegia (SPG78)
Brain 140, 287-305, 2017. (Epub 2017 Jan 30)

Holvoet, T, Devriese, S, Castermans, K, Boland, S, Leysen, D, Vandewynckel, YP, Devisscher, L, Van den Bossche, L, Van Welden, S, Dullaers, M, Vandenbroucke, RE, De Rycke, R, Geboes, K, Bourin, A, Defert, O, Hindryckx, P, De Vos, M, Laukens, D.
Treatment of intestinal fibrosis in experimental inflammatory bowel disease by the pleiotropic actions of a local Rho kinase inhibitor
Gastroenterology 153, 1054-1067, 2017. (Epub 2017 Jun 19)

Lybaert, L, Ryu, KA, De Rycke, R, Chon, AC, De Wever, O, Vermaelen, KY, Esser-Kahn, A, De Geest, BG.
Polyelectrolyte-Enrobed Cancer Cells in View of Personalized Immune-Therapy
Advanced Science 4, 6, 2017. (Epub 2017 May 2)

Lybaert, L, Ryu, KA, Nuhn, L, De Rycke, R, De Wever, O, Chon, AC, Esser-Kahn, AP, De Geest, BG.
Cancer Cell Lysate Entrapment in CaCO3 Engineered with Polymeric TLR-Agonists: Immune-Modulating Microparticles in View of Personalized Antitumor Vaccination
Chemistry of Materials 29, 4209-4217, 2017. (Epub 2017 Apr 20)

Steeland, S, Van Ryckeghem, S, Van Imschoot, G, De Rycke, R, Toussaint, W, Vanhoutte, L, Vanhove, C, De Vos, F, Vandenbroucke, RE, Libert, C.
TNFR1 inhibition with a Nanobody protects against EAE development in mice
Sci Rep 7, 13646, 2017. (Epub 2017 Oct 20)

Tavernier, SJ, Osorio, F, Vandersarren, L, Vetters, J, Vanlangenakker, N, Van Isterdael, G, Vergote, K, De Rycke, R, Parthoens, E, van de Laar, L, Iwawaki, T, Del Valle, JR, Hu, CCA, Lambrecht, BN, Janssens, S.
Regulated IRE1-dependent mRNA decay sets the threshold for dendritic cell survival
Nat Cell Biol 19, 698-710, 2017. (Epub 2017 May 1)

Van Damme, T, Gardeitchik, T, Mohamed, M, Guerrero-Castillo, S, Freisinger, P, Guillemyn, B, Kariminejad, A, Dalloyaux, D, van Kraaij, S, Lefeber, DJ, Syx, D, Steyaert, W, De Rycke, R, Hoischen, A, Kamsteeg, EJ, Wong, SY, van Scherpenzeel, M, Jamali, P, Brandt, U, et al..
Mutations in ATP6V1E1 or ATP6V1A Cause Autosomal-Recessive Cutis Laxa
Am J Hum Genet 100, 216-227, 2017. (Epub 2017 Feb 2)

van Malderen, SJM, Laforce, B, Van Acker, T, Nys, C, De Rijcke, M, de Rycke, R, De Bruyne, M, Boone, MN, De Schamphelaere, K, Borovinskaya, O, De Samber, B, Vincze, L, Vanhaecke, F.
Three-Dimensional Reconstruction of the Tissue-Specific Multielemental Distribution within Ceriodaphnia dubia via Multimodal Registration Using Laser Ablation ICP-Mass Spectrometry and X-ray Spectroscopic Techniques
Analytical Chemistry 89, 4161-4168, 2017. (Epub 2017 Apr 4)

Van Opdenbosch, N, Van Gorp, H, Verdonckt, M, Saavedra, PHV, de Vasconcelos, NM, Goncalves, A, Vande Walle, L, Demon, D, Matusiak, M, Van Hauwermeiren, F, D'Hont, J, Hochepied, T, Krautwald, S, Kanneganti, TD, Lamkanfi, M.
Caspase-1 Engagement and TLR-Induced c-FLIP Expression Suppress ASC/Caspase-8-Dependent Apoptosis by Inflammasome Sensors NLRP1b and NLRC4
Cell Rep 21, 3427-3444, 2017. (Epub 2017 Dec 19)

Balusu, S, Van Wonterghem, E, De Rycke, R, Raemdonck, K, Stremersch, S, Gevaert, K, Brkic, M, Demeestere, D, Vanhooren, V, Hendrix, A, Libert, C, Vandenbroucke, RE.
Identification of a novel mechanism of blood-brain communication during peripheral inflammation via choroid plexus-derived extracellular vesicles
EMBO Mol Med 8, 1162-1183, 2016. (Epub 2016 Oct 4)

Betti, C, Vanhoutte, I, Coutuer, S, De Rycke, R, Mishev, K, Vuylsteke, M, Aesaert, S, Rombaut, D, Gallardo, R, De Smet, F, Xu, J, Van Lijsebettens, M, Van Breusegem, F, Inze, D, Rousseau, F, Schymkowitz, J, Russinova, E.
Sequence-Specific Protein Aggregation Generates Defined Protein Knockdowns in Plants
Plant Physiology 171, 773-787, 2016. (Epub 2016 Jun)

Brackman, G, Breyne, K, De Rycke, R, Vermote, A, Van Nieuwerburgh, F, Meyer, E, Van Calenbergh, S, Coenye, T.
The Quorum Sensing Inhibitor Hamamelitannin Increases Antibiotic Susceptibility of Staphylococcus aureus Biofilms by Affecting Peptidoglycan Biosynthesis and eDNA Release
Sci Rep 6, 20321, 2016. (Epub 2016 Feb 1)

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