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Lasierra Losada, M, Pauler, M, Vandamme, N, Goossens, S, Berx, G, Leppkes, M, Schuhwerk, H, Brabletz, S, Brabletz, T, Stemmler, MP.
Pancreas morphogenesis and homeostasis depends on tightly regulated Zeb1 levels in epithelial cells
Cell Death Discov 7, 138, 2021. (Epub 2021 Jun 11)

Pombo Antunes, AR, Scheyltjens, I, Lodi, F, Messiaen, J, Antoranz, A, Duerinck, J, Kancheva, D, Martens, L, De Vlaminck, K, Van Hove, H, Kjolner Hansen, SS, Bosisio, FM, Van der Borght, K, De Vleeschouwer, S, Sciot, R, Bouwens, L, Verfaillie, M, Vandamme, N, Vandenbroucke, RE, et al..
Single-cell profiling of myeloid cells in glioblastoma across species and disease stage reveals macrophage competition and specialization
Nat Neurosci 24, 595-610, 2021. (Epub 2021 Mar 29)

Seyfferth, C, Renema, J, Wendrich, JR, Eekhout, T, Seurinck, R, Vandamme, N, Blob, B, Saeys, Y, Helariutta, Y, Birnbaum, KD, De Rybel, B.
Advances and Opportunities of Single-Cell Transcriptomics for Plant Research
Annu Rev Plant Biol 72, 847-866, 2021. (Epub 2021 Mar 17)

Van Hove, L, Lecomte, K, Roels, J, Vandamme, N, Vikkula, HK, Hoorens, I, Ongenae, K, Hochepied, T, Donati, G, Saeys, Y, Quist, SR, Watt, FM, van Loo, G, Hoste, E.
Fibrotic enzymes modulate wound-induced skin tumorigenesis
EMBO Rep , e51573, 2021. (Epub 2021 Mar 29)

Bosteels, C, Neyt, K, Vanheerswynghels, M, van Helden, MJ, Sichien, D, Debeuf, N, De Prijck, S, Bosteels, V, Vandamme, N, Martens, L, Saeys, Y, Louagie, E, Lesage, M, Williams, DL, Tang, SC, Mayer, JU, Ronchese, F, Scott, CL, Hammad, H, et al..
Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection
Immunity 52, 1039-1056, 2020. (Epub 2020 May 4)

Bruneel, K, Verstappe, J, Vandamme, N, Berx, G.
Intrinsic Balance between ZEB Family Members Is Important for Melanocyte Homeostasis and Melanoma Progression
Cancers (Basel) 12, 2248, 2020. (Epub 2020 Aug 11)

Lavaert, M, Liang, KL, Vandamme, N, Park, JE, Roels, J, Kowalczyk, MS, Li, B, Ashenberg, O, Tabaka, M, Dionne, D, Tickle, TL, Slyper, M, Rozenblatt-Rosen, O, Vandekerckhove, B, Leclercq, G, Regev, A, Van Vlierberghe, P, Guilliams, M, Teichmann, SA, et al..
Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes
Immunity 52, 1088-1104, 2020. (Epub 2020 Apr 13)

Park, JE, Botting, RA, Dominguez Conde, C, Popescu, DM, Lavaert, M, Kunz, DJ, Goh, I, Stephenson, E, Ragazzini, R, Tuck, E, Wilbrey-Clark, A, Roberts, K, Kedlian, VR, Ferdinand, JR, He, X, Webb, S, Maunder, D, Vandamme, N, Mahbubani, KT, et al..
A cell atlas of human thymic development defines T cell repertoire formation
Science 367, eaay3224, 2020. (Epub 2020 Feb 21)

Remmerie, A, Martens, L, Thone, T, Castoldi, A, Seurinck, R, Pavie, B, Roels, J, Vanneste, B, De Prijck, S, Vanhockerhout, M, Binte Abdul Latib, M, Devisscher, L, Hoorens, A, Bonnardel, J, Vandamme, N, Kremer, A, Borghgraef, P, Van Vlierberghe, H, Lippens, S, Pearce, E., Saeys, Y, Scott, CL.
Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver
Immunity 53, 641-657 e14, 2020. (Epub 2020 Aug 26)

Slowicka, K, Petta, I, Blancke, G, Hoste, E, Dumas, E, Sze, M, Vikkula, H, Radaelli, E, Haigh, J, Jonckheere, S, Taminau, J, Vandamme, N, Wullaert, A, Tulchinsky, E, Nittner, D, Van Vlierberghe, P, De Hertogh, G, Baldin, P, Etlioglu, E, et al. Berx, G, Vereecke, L, van Loo,G.
Zeb2 drives invasive and microbiota-dependent colon carcinoma
Nature Cancer 1, 620-634, 2020. (Epub 2020 Jun 15)

Vandamme, N, Denecker, G, Bruneel, K, Blancke, G, Akay, O, Taminau, J, De Coninck, J, De Smedt, E, Skrypek, N, Van Loocke, W, et al.,Nittner, D, Kohler, C, et al.,Bouchez, L, et al, Andries, V, Rambow, F, Van Vlierberghe, P, Goossens, S, van den Oord, J, Marine, J-C, Berx, G
The EMT transcription factor ZEB2 promotes proliferation of primary and metastatic melanoma while suppressing an invasive, mesenchymal-like phenotype
Cancer Res 80, 2983-2995, 2020. (Epub 2020 Jun 5)

Wendrich, JR, Yang, B, Vandamme, N, Verstaen, K, Smet, W, Van de Velde, C, Minne, M, Wybouw, B, Mor, E, Arents, HE, Nolf, J, Van Duyse, J, Van Isterdael, G, Maere, S, Saeys, Y, De Rybel, B.
Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions
Science 370, eaay4970eaay4970, 2020. (Epub 2020 Sep 17)

Jin, Q, Martinez, CA, Arcipowski, KM, Zhu, Y, Gutierrez-Diaz, BT, Wang, KK, Johnson, MR, Volk, A, Wang, F, Wu, J, Grove, C, Wang, H, Sokirniy, I, Thomas, PM, Goo, YA, et al., Vandamme, N, Berx, G, Goossens, S, et al..
USP7 cooperates with NOTCH1 to drive the oncogenic transcriptional program in T cell leukemia
Clin Cancer Res 25, 222-239, 2019. (Epub 2018 Sep 17)

Milani, G, Matthijssens, F, Van Loocke, W, Durinck, K, Roels, J, Peirs, S, Thenoz, M, Pieters, T, Reunes, L, Lintermans, B, Vandamme, N, Lammens, T, Van Roy, N, Van Nieuwerburgh, F, Deforce, D, Schwab, C, Raimondi, S, Dalla Pozza, L, Carroll, AJ, 3rd, et al..
Genetic characterization and therapeutic targeting of MYC-rearranged T cell acute lymphoblastic leukaemia
Br J Haematol 185, 169-174, 2019. (Epub 2018 Jun 25)

Vandamme, N, Berx, G.
From neural crest cells to melanocytes: cellular plasticity during development and beyond
Cell Mol Life Sci 76, 1919-1934, 2019. (Epub 2019 Mar 4)

Van Hove, H, Martens, L, Scheyltjens, I, De Vlaminck, K, Pombo Antunes, AR, De Prijck, S, Vandamme, N, De Schepper, S, Van Isterdael, G, Scott, CL, Aerts, J, Berx, G, Boeckxstaens, GE, Vandenbroucke, RE, Vereecke, L, Moechars, D, Guilliams, M, Van Ginderachter, JA, Saeys, Y, Movahedi, K.
A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment
Nat Neurosci 22, 10211035, 2019. (Epub 2019 May 6)

Renard, M, Vanhauwaert, S, Vanhomwegen, M, Rihani, A, Vandamme, N, Goossens, S, Berx, G, Van Vlierberghe, P, Haigh, JJ, Decaesteker, B, Van Laere, J, Lambertz, I, Speleman, F, Vandesompele, J, Willaert, A.
Expressed repetitive elements are broadly applicable reference targets for normalization of reverse transcription-qPCR data in mice
Sci Rep 8, 7642, 2018. (Epub 2018 May 16)

Scott, CL, T'Jonck, W, Martens, L, Todorov, H, Sichien, D, Soen, B, Bonnardel, J, De Prijck, S, Vandamme, N, Cannoodt, R, Saelens, W, Vanneste, B, Toussaint, W, De Bleser, P, Takahashi, N, Vandenabeele, P, et al., Lambrecht, BN, De Baetselier, P, Milling, SWF, Van Ginderachter, JA, Malissen, B, Berx, G, Beschin, A, Saeys, Y, Guilliams, M.
The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages
Immunity 49, 312-325, 2018. (Epub 2018 Jul 31)

Skrypek, N, Bruneel, K, Vandewalle, C, De Smedt, E, Soen, B, Loret, N, Taminau, J, Goossens, S, Vandamme, N, Berx, G.
ZEB2 stably represses RAB25 expression through epigenetic regulation by SIRT1 and DNMTs during epithelial-to-mesenchymal transition
Epigenetics Chromatin 11, 70, 2018. (Epub 2018 Nov 16)

Consortium, E-T, Van Deun, J, Mestdagh, P, Agostinis, P, Akay, O, Anand, S, Anckaert, J, Martinez, ZA, Baetens, T, Beghein, E, Bertier, L, Berx, G, Boere, J, al., E, De Smedt, E, al., E, Soen, B, al., E, Van Vliet, AR, Vandamme, N, et al..
EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research
Nat Methods 14, 228-232, 2017. (Epub 2017 Feb 28)

Goossens, S, Peirs, S, Van Loocke, W, Wang, J, Takawy, M, Matthijssens, F, Sonderegger, SE, Haigh, K, Nguyen, T, Vandamme, N, Costa, M, Carmichael, C, Van Nieuwerburgh, F, Deforce, D, Kleifeld, O, Curtis, DJ, Berx, G, Van Vlierberghe, P, Haigh, JJ.
Oncogenic ZEB2 activation drives sensitivity towards KDM1A inhibition in T-cell acute lymphoblastic leukemia
Blood 129, 981-990, 2017. (Epub 2017 Jan 9)

Goossens, S, Vandamme, N, Van Vlierberghe, P, Berx, G.
EMT transcription factors in cancer development re-evaluated: Beyond EMT and MET
Biochim Biophys Acta 1868, 584-591, 2017. (Epub 2017 Jun 29)

Kohler, C, Nittner, D, Rambow, F, Radaelli, E, Stanchi, F, Vandamme, N, Baggiolini, A, Sommer, L, Berx, G, van den Oord, JJ, Gerhardt, H, Blanpain, C, Marine, JC.
Mouse Cutaneous Melanoma Induced by Mutant BRaf Arises from Expansion and Dedifferentiation of Mature Pigmented Melanocytes
Cell Stem Cell 21, 679-693, 2017. (Epub 2017 Oct 12)

Peirs, S, Frismantas, V, Matthijssens, F, Van Loocke, W, Pieters, T, Vandamme, N, Lintermans, B, Dobay, MP, Berx, G, Poppe, B, Goossens, S, Bornhauser, BC, Bourquin, JP, Van Vlierberghe, P.
Targeting BET proteins improves the therapeutic efficacy of BCL-2 inhibition in T-cell acute lymphoblastic leukemia
Leukemia 31, 2037-2047, 2017. (Epub 2017 Feb 3 )

Pieters, T, Haenebalcke, L, Bruneel, K, Vandamme, N, Hochepied, T, van Hengel, J, Wirth, D, Berx, G, Haigh, JJ, van Roy, F, Goossens, S.
Structure-function Studies in Mouse Embryonic Stem Cells Using Recombinase-mediated Cassette Exchange
J Vis Exp , 122, 2017. (Epub 2017 Apr 27)

Skrypek, N, Goossens, S, De Smedt, E, Vandamme, N, Berx, G.
Epithelial-to-Mesenchymal Transition: Epigenetic Reprogramming Driving Cellular Plasticity
Trends Genet 33, 943-959, 2017. (Epub 2017 Sep 14)

van Helden, MJ, Goossens, S, Daussy, C, Mathieu, AL, Faure, F, Marcais, A, Vandamme, N, Farla, N, Mayol, K, Viel, S, Degouve, S, Debien, E, Seuntjens, E, Conidi, A, Chaix, J, Mangeot, P, de Bernard, S, Buffat, L, Haigh, JJ, et al..
Terminal NK cell maturation is controlled by concerted actions of T-bet and Zeb2 and is essential for melanoma rejection
J Exp Med 212, 2015-2025, 2015. (Epub 2015 Oct 26)

Denecker, G, Vandamme, N, Akay, Ö, Koludrovic, D, Taminau, J, Lemeire, K, Gheldof, A, De Craene, B, Van Gele, M, Brochez, L, Udupi, G, Rafferty, M, Balint, B, Gallagher, WM, Ghanem, G, Huylebroeck, D, Haigh, JJ, van den Oord, J, Larue, L, Davidson, I, Marine, JC, Berx, G.
Identification of a ZEB2-MITF-ZEB1 transcriptional network that controls melanogenesis and melanoma progression
Cell Death Differ 21, 1250-1261, 2014. (Epub 2014 Apr 25)

Vandamme, N, Berx, G.
Melanoma cells revive an embryonic transcriptional network to dictate phenotypic heterogeneity
Front Oncol 4, 1-6, 2014. (Epub 2014 Dec 9)

Pringels, S, Van Damme, N, De Craene, B, Pattyn, P, Ceelen, W, Peeters, M, Grooten, J.
Clinical procedure for colon carcinoma tissue sampling directly affects the cancer marker-capacity of VEGF family members
BMC Cancer 12, 515, 2012. (Epub 2012 Nov 13)

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