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Pelst, MP, Hobart, C, Wallaeys, C, De Rooster, H, Gansemans, Y, Van Nieuwerburgh, F, Devriendt, B, Cox, E.
Adjuvanting Allergen Extracts for Sublingual Immunotherapy: Calcitriol Downregulates CXCL8 Production in Primary Sublingual Epithelial Cells
Front Immunol 11, 1033, 2020. (Epub 2020 Jun 9)

Peralta, D, Saeys, Y.
Robust unsupervised dimensionality reduction based on feature clustering for single-cell imaging data
Applied Soft Computing Journal 93, 106421, 2020. (Epub 2020 May 23)

Pieters, T, Sanders, E, Tian, H, van Hengel, J, van Roy, F.
Neural defects caused by total and Wnt1-Cre mediated ablation of p120ctn in mice
BMC Dev Biol 20, 17, 2020. (Epub 2020 Aug 03)

Pombo Antunes, AR, Scheyltjens, I, Duerinck, J, Neyns, B, Movahedi, K, Van Ginderachter, JA.
Understanding the glioblastoma immune microenvironment as basis for the development of new immunotherapeutic strategies
Elife 9, e52176, 2020. (Epub 2020 Feb 4)

Priem, D, van Loo, G, Bertrand, MJM.
A20 and Cell Death-driven Inflammation
Trends Immunol 41, 421-435, 2020. (Epub 2020 Mar 30)

Qian, J, Olbrecht, S, Boeckx, B, Vos, H, Laoui, D, Etlioglu, E, Wauters, E, Pomella, V, Verbandt, S, Busschaert, P, Bassez, A, Franken, A, Bempt, MV, Xiong, J, Weynand, B, van Herck, Y, Antoranz, A, Bosisio, FM, Thienpont, B, et al..
A pan-cancer blueprint of the heterogeneous tumor microenvironment revealed by single-cell profiling
Cell Res 30, 745-762, 2020. (Epub 2020 Jun 19)

Raaymakers, C, Stijlemans, B, Martin, C, Zaman, S, Ballet, S, Martel, A, Pasmans, F, Roelants, K.
A New Family of Diverse Skin Peptides from the Microhylid Frog Genus Phrynomantis
Molecules 25, 912, 2020. (Epub 2020 Feb 18)

Remmerie, A, Martens, L, Scott, CL.
Macrophage Subsets in Obesity, Aligning the Liver and Adipose Tissue
Front Endocrinol (Lausanne) 11, 259, 2020. (Epub 2020 Apr 29)

Remmerie, A, Martens, L, Thone, T, Castoldi, A, Seurinck, R, Pavie, B, Roels, J, Vanneste, B, De Prijck, S, Vanhockerhout, M, Binte Abdul Latib, M, Devisscher, L, Hoorens, A, Bonnardel, J, Vandamme, N, Kremer, A, Borghgraef, P, Van Vlierberghe, H, Lippens, S, Pearce, E., Saeys, Y, Scott, CL.
Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver
Immunity 53, 641-657 e14, 2020. (Epub 2020 Aug 26)

Renson, T, Depicker, A, De Craemer, AS, Deroo, L, Varkas, G, de Hooge, M, Carron, P, Jans, L, Herregods, N, Dehaene, I, Vandenberghe, G, Roelens, K, Van den Bosch, FE, Elewaut, D.
High prevalence of spondyloarthritis-like MRI lesions in postpartum women: a prospective analysis in relation to maternal, child and birth characteristics
Ann Rheum Dis 79, 929-934, 2020. (Epub 2020 Apr 16)

Roberti, MP, Yonekura, S, Duong, CPM, Picard, M, Ferrere, G, Tidjani Alou, M, , et al., Kourula, S, et al., Vanden Berghe, T, Ghiringhelli, F, Vandenabeele, P, Kroemer, G, Zitvogel, L.
Chemotherapy-induced ileal crypt apoptosis and the ileal microbiome shape immunosurveillance and prognosis of proximal colon cancer
Nat Med 26, 919-931, 2020. (Epub 2020 May 25)

Roels, J, Vernaillen, F, Kremer, A, Goncalves, A, Aelterman, J, Luong, HQ, Goossens, B, Philips, W, Lippens, S, Saeys, Y.
An interactive ImageJ plugin for semi-automated image denoising in electron microscopy
Nat Commun 11, 771, 2020. (Epub 2020 Feb 7)

Romao, E, Krasniqi, A, Maes, L, Vandenbrande, C, Sterckx, YG, Stijlemans, B, Vincke, C, Devoogdt, N, Muyldermans, S.
Identification of Nanobodies against the Acute Myeloid Leukemia Marker CD33
Int J Mol Sci 21, 310, 2020. (Epub 2020 Jan 2)

Saeys, Y, Finak, G.
Special Issue on Machine Learning for Single Cell Data
Cytometry A 97, 217-218, 2020. (Epub 2020 Mar 6)

Sanchez-Fernandez, A, Romero, L, Peralta, D, Medina-Perez, M, Saeys, Y, Herrera, F, Tabik, S.
Asynchronous Processing for Latent Fingerprint Identification on Heterogeneous CPU-GPU Systems
IEEE Access 8, 124236–124253, 2020. (Epub 2020 Jun 29)

Savvides, SN, Elewaut, D.
Small-molecule inhibitors get pro-inflammatory TNF into shape
Nat Rev Rheumatol 16, 189-190, 2020. (Epub 2020 Feb 14)

Scherger, M, Bolli, E, Pombo Antunes, AR, Arnouk, S, Stickdorn, J, Van Driessche, A, Schild, H, Grabbe, S, De Geest, BG, Van Ginderachter, JA, Nuhn, L.
Transient Multivalent Nanobody Targeting to CD206-Expressing Cells via PH-Degradable Nanogels
Cells 9, E2222, 2020. (Epub 2020 Oct 1)

Schoonvaere, K, Brunain, M, Baeke, F, De Bruyne, M, De Rycke, R, de Graaf, DC.
Comparison between Apicystis cryptica sp. n. and Apicystis bombi (Arthrogregarida, Apicomplexa): Gregarine parasites that cause fat body hypertrophism in bees
Eur J Protistol 73, 125688, 2020. (Epub 2020 Feb 21)

Seo, J, Seong, D, Nam, YW, Hwang, CH, Lee, SR, Lee, CS, Jin, Y, Lee, HW, Oh, DB, Vandenabeele, P, Song, J.
Beclin 1 functions as a negative modulator of MLKL oligomerisation by integrating into the necrosome complex
Cell Death Differ 27, 3065-3081, 2020. (Epub 2020 May 26)

Seong, D, Jeong, M, Seo, J, Lee, JY, Hwang, CH, Shin, HC, Shin, JY, Nam, YW, Jo, JY, Lee, H, Kim, HJ, Kim, HR, Oh, JH, Ha, SJ, Kim, SJ, Roe, JS, Kim, W, et al., Vandenabeele, P , et al..
Identification of MYC as an antinecroptotic protein that stifles RIPK1-RIPK3 complex formation
Proc Natl Acad Sci U S A 117, 19982-19993, 2020. (Epub 2020 Aug 04)

Shemer, A, Scheyltjens, I, Frumer, GR, Kim, JS, Grozovski, J, Ayanaw, S, Dassa, B, Van Hove, H, Chappell-Maor, L, Boura-Halfon, S, Leshkowitz, D, Mueller, W, Maggio, N, Movahedi, K, Jung, S.
Interleukin-10 Prevents Pathological Microglia Hyperactivation following Peripheral Endotoxin Challenge
Immunity 53, 1033-1049 e7, 2020. (Epub 2020 Oct 12)

Simpson, J, Loh, Z, Ullah, MA, Lynch, JP, Werder, RB, Collinson, N, Zhang, V, Dondelinger, Y, Bertrand, MJM, Everard, ML, Blyth, CC, Hartel, G, Van Oosterhout, AJ, Gough, PJ, Bertin, J, Upham, JW, Spann, KM, Phipps, S.
RSV Infection Promotes Necroptosis and HMGB1 Release by Airway Epithelial Cells
Am J Respir Crit Care Med 201, 1358-1371, 2020. (Epub 2020 Feb 27)

Slowicka, K, Petta, I, Blancke, G, Hoste, E, Dumas, E, Sze, M, Vikkula, H, Radaelli, E, Haigh, J, Jonckheere, S, Taminau, J, Vandamme, N, Wullaert, A, Tulchinsky, E, Nittner, D, Van Vlierberghe, P, De Hertogh, G, Baldin, P, Etlioglu, E, et al. Berx, G, Vereecke, L, van Loo,G.
Zeb2 drives invasive and microbiota-dependent colon carcinoma
Nature Cancer 1, 620-634, 2020. (Epub 2020 Jun 15)

Souffriau, J, Timmermans, S, Vanderhaeghen, T, Wallaeys, C, Van Looveren, K, Aelbrecht, L, Dewaele, S, Vandewalle, J, et al., Eggermont, M, De Rycke, R, De Bruyne, M, Ballegeer, M, Vandevyver, S, Hochepied, T, Beyaert, R, Libert, C.
Zinc inhibits lethal inflammatory shock by preventing microbe-induced interferon signature in intestinal epithelium
EMBO Mol Med , e11917, 2020. (Epub 2020 Sep 11)

Sprooten, J, De Wijngaert, P, Vanmeerbeerk, I, Martin, S, Vangheluwe, P, Schlenner, S, Krysko, DV, Parys, JB, Bultynck, G, Vandenabeele, P, Garg, AD.
Necroptosis in Immuno-Oncology and Cancer Immunotherapy
Cells 9, 1823, 2020. (Epub 2020 Aug 01)

Staal, J.
Fytohormonen : verschillende bioactieve moleculen die metabolisme en ontsteking beïnvloeden in de mens
Bloedvaten, Hart, Longen 25, 32 - 35, 2020. (Epub 2020)

Stijlemans, B, Korf, H, De Baetselier, P, Brys, L, Van Ginderachter, JA, Magez, S, De Trez, C.
Hepatocyte-derived IL-10 plays a crucial role in attenuating pathogenicity during the chronic phase of T. congolense infection
PLoS Pathog 16, e1008170, 2020. (Epub 2020 Feb 3)

Teufelberger, AR, Van Nevel, S, Hulpiau, P, Nordengrun, M, Savvides, SN, De Graeve, S, Akula, S, Holtappels, G, De Ruyck, N, Declercq, W, Vandenabeele, P, Hellman, L, Broker, BM, Krysko, DV, Bachert, C, Krysko, O.
Mouse Strain-Dependent Difference Toward the Staphylococcus aureus Allergen Serine Protease-Like Protein D Reveals a Novel Regulator of IL-33
Front Immunol 11, 582044, 2020. (Epub 2020 Sep 25)

Thyssen, JP, Jakasa, I, Riethmuller, C, Schon, MP, Braun, A, Haftek, M, Fallon, PG, Wroblewski, J, Jakubowski, H, Eckhart, L, Declercq, W, Koppes, S, Engebretsen, KA, Bonefeld, C, Irvine, AD, Keita-Alassane, S, Simon, M, Kawasaki, H, Kubo, A, et al..
Filaggrin Expression and Processing Deficiencies Impair Corneocyte Surface Texture and Stiffness in Mice
J Invest Dermatol 140, 615-623, 2020. (Epub 2019 Aug 31)

Tipanee, J, Di Matteo, M, Tulalamba, W, Samara-Kuko, E, Keirsse, J, Van Ginderachter, JA, Chuah, MK, VandenDriessche, T.
Validation of miR-20a as a Tumor Suppressor Gene in Liver Carcinoma Using Hepatocyte-Specific Hyperactive piggyBac Transposons
Mol Ther Nucleic Acids 19, 1309-1329, 2020. (Epub 2020 Mar 6)

Todorov, H, Cannoodt, R, Saelens, W, Saeys, Y.
TinGa: fast and flexible trajectory inference with Growing Neural Gas
Bioinformatics 36, i66-i74, 2020. (Epub 2020 Jul 1)

Tougaard, P, Martinsen, LO, Lutzhoft, DO, Jensen, HE, Flethoj, M, Vandenabeele, P, Pedersen, AE, Skov, S, Hansen, AK, Hansen, CHF.
TL1A regulates adipose-resident innate lymphoid immune responses and enables diet-induced obesity in mice
Int J Obes (Lond) 44, 1062-1074, 2020. (Epub 2020 Jan 30)

Trocha, KM, Kip, P, Tao, M, MacArthur, MR, Trevino-Villarreal, H, Longchamp, A, Toussaint, W, Lambrecht, BN, de Vries, MR, Quax, PHA, Mitchell, JR, Ozaki, CK.
Short-Term Preoperative Protein Restriction Attenuates Vein Graft Disease via Induction of Cystathionine Upsilon-Lyase
Cardiovasc Res 116, 416–428, 2020. (Epub 2019 Mar 29)

Van Coillie, S, Wiernicki, B, Xu, J.
Molecular and Cellular Functions of CTLA-4
Adv Exp Med Biol 1248, 7-32, 2020. (Epub 2020 Mar 18)

Vandaele, R, Nervo, GA, Gevaert, O.
Topological image modification for object detection and topological image processing of skin lesions
Sci Rep 10, 21061, 2020. (Epub 2020 Dec 3)

Vandaele, R, Saeys, Y, De Bie, T.
Mining Topological Structure in Graphs through Forest Representations
Journal of Machine Learning Research 21, 1-68, 2020. (Epub Oct 2020)

Van Damme, KFA, Tavernier, S, Van Roy, N, De Leeuw, E, Declercq, J, Bosteels, C, Maes, B, De Bruyne, M, Bogaert, D, Bosteels, V, Hoste, L, Naesens, L, Maes, P, Grifoni, A, Weiskopf, D, Sette, A, Depuydt, P, Van Braeckel, E, Haerynck, F, et al..
Case Report: Convalescent Plasma, a Targeted Therapy for Patients with CVID and Severe COVID-19
Front Immunol 11, 596761, 2020. (Epub 2020 Nov 20)

Vandamme, N, Denecker, G, Bruneel, K, Blancke, G, Akay, O, Taminau, J, De Coninck, J, De Smedt, E, Skrypek, N, Van Loocke, W, et al.,Nittner, D, Kohler, C, et al.,Bouchez, L, et al, Andries, V, Rambow, F, Van Vlierberghe, P, Goossens, S, van den Oord, J, Marine, J-C, Berx, G
The EMT transcription factor ZEB2 promotes proliferation of primary and metastatic melanoma while suppressing an invasive, mesenchymal-like phenotype
Cancer Res 80, 2983-2995, 2020. (Epub 2020 Jun 5)

Van den Berge, K, Roux de Bezieux, H, Street, K, Saelens, W, Cannoodt, R, Saeys, Y, Dudoit, S, Clement, L.
Trajectory-based differential expression analysis for single-cell sequencing data
Nat Commun 11, 1201, 2020. (Epub 2020 Mar 5)

Van den Broek, B, Pintelon, I, Hamad, I, Kessels, S, Haidar, M, Hellings, N, Hendriks, JJA, Kleinewietfeld, M, Brone, B, Timmerman, V, Timmermans, JP, Somers, V, Michiels, L, Irobi, J.
Microglial derived extracellular vesicles activate autophagy and mediate multi-target signaling to maintain cellular homeostasis
Journal of Extracellular Vesicles 10, e12022, 2020. (Epub 2020 Nov 25)

Vandendriessche, C, Bruggeman, A, Van Cauwenberghe, C, Vandenbroucke, RE.
Extracellular Vesicles in Alzheimer's and Parkinson's Disease: Small Entities with Large Consequences
Cells 9, 2485, 2020. (Epub 2020 Nov 15)

Vanderhaeghen, T, Vandewalle, J, Libert, C.
Hypoxia-inducible factors in metabolic reprogramming during sepsis
FEBS J 287, 1478-1495, 2020. (Epub 2020 Jan 23)

Van der Jeught, K, Sun, Y, Fang, Y, Zhou, Z, Jiang, H, Yu, T, Yang, J, Kamocka, MM, So, KM, Li, Y, Eyvani, H, Sandusky, GE, Frieden, M, Braun, H, Beyaert, R, He, X, Zhang, X, Zhang, C, Paczesny, S, et al..
ST2 as checkpoint target for colorectal cancer immunotherapy
JCI Insight 5, 136073, 2020. (Epub 2020 May 7)

Vanderkerken, M, Maes, B, Vandersarren, L, Toussaint, W, Deswarte, K, Vanheerswynghels, M, Pouliot, P, Martens, L, Van Gassen, S, Arthur, CM, Kirkling, ME, Reizis, B, Conrad, D, Stowell, S, Hammad, H, Lambrecht, BN.
TAO-kinase 3 governs the terminal differentiation of NOTCH2-dependent splenic conventional dendritic cells
Proc Natl Acad Sci U S A 117, 31331-31342, 2020. (Epub 2020 Nov 19)

Van de Sande, B, Flerin, C, Davie, K, De Waegeneer, M, Hulselmans, G, Aibar, S, Seurinck, R, Saelens, W, Cannoodt, R, Rouchon, Q, Verbeiren, T, De Maeyer, D, Reumers, J, Saeys, Y, Aerts, S.
A scalable SCENIC workflow for single-cell gene regulatory network analysis
Nat Protoc 15, 2247-2276, 2020. (Epub 2020 Jun 19)

Vandewalle, J, Libert, C.
GILZ in sepsis: "Poor is the pupil who does not surpass his master"
Eur J Immunol 50, 490-493, 2020. (Epub 2020 Feb 27)

Vandewalle, J, Libert, C.
Glucocorticoids in Sepsis: To Be or Not to Be
Front Immunol 11, 1318, 2020. (Epub 2020 Jul 21)

Vandewalle, J, Vanderhaeghen, T, Beyaert, R, Libert, C.
Taking the STING Out of Sepsis?
Cell Host Microbe 27, 491-493, 2020. (Epub 2020 Apr 8)

Van Dingenen, J, Pieters, L, Van Nuffel, E, Lefebvre, RA.
Hemin reduces postoperative ileus in a heme oxygenase 1-dependent manner while dimethyl fumarate does without heme oxygenase 1-induction
Neurogastroenterol Motil , e13624, 2020. (Epub 2019 May 23)

Van Gassen, S, Gaudilliere, B, Angst, MS, Saeys, Y, Aghaeepour, N.
CytoNorm: A Normalization Algorithm for Cytometry Data
Cytometry A 97, 268-278, 2020. (Epub 2019 Oct 21)

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