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Selected IRC publications

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Sabel, R, Fronza, AS, Carrenho, LZB, Maes, A, Barros, ML, Pollo, LAE, Biavatti, MW, D'Herde, K, Vandenabeele, P, Kreuger.
Anti-inflammatory activity of the sesquiterpene lactone diacethylpiptocarphol in dextransulfate sodium-induced colitis in mice
J Ethnopharmacol 245, 112186, 2019. (Epub 2019 Aug 28)

Saelens, W, Cannoodt, R, Todorov, H, Saeys, Y.
A comparison of single-cell trajectory inference methods
Nat Biotechnol 37, 547-554, 2019. (Epub 2019 Apr 1)

Sarcar, S, Tulalamba, W, Rincon, MY, Tipanee, J, Pham, HQ, Evens, H, Boon, D, Samara-Kuko, E, Keyaerts, M, Loperfido, M, Berardi, E, Jarmin, S, In't Veld, P, Dickson, G, Lahoutte, T, Sampaolesi, M, De Bleser, P, VandenDriessche, T, Chuah, MK.
Next-generation muscle-directed gene therapy by in silico vector design
Nat Commun 10, 492, 2019. (Epub 2019 Feb 1)

Schuijs, MJ, Hammad, H, Lambrecht, BN.
Professional and 'Amateur' Antigen-Presenting Cells In Type 2 Immunity
Trends Immunol 40, 22-34, 2019. (Epub 2018 Nov 27)

Schweigreiter, R, Cawthorne, C, Lippens, S, Van Minnebruggen, G, Munck, S.
Collaborating by courier, imaging by mail
EMBO Rep , e49755, 2019. (Epub 2019 Dec 16)

Scott, CL, Omilusik, KD.
ZEBs: Novel Players in Immune Cell Development and Function
Trends Immunol 40, 431-446, 2019. (Epub 2019 Apr 5)

Senders, ML, Hernot, S, Carlucci, G, van de Voort, JC, Fay, F, Calcagno, C, Tang, J, Alaarg, A, Zhao, Y, Ishino, S, Palmisano, A, Boeykens, G, Meerwaldt, AE, Sanchez-Gaytan, BL, Baxter, S, Zendman, L, Lobatto, ME, et al., Raes, G, et al..
Nanobody-Facilitated Multiparametric PET/MRI Phenotyping of Atherosclerosis
JACC Cardiovasc Imaging 12, 2015-2026, 2019. (Epub 2018 Oct 12)

Serramito-Gomez, I, Boada-Romero, E, Slowicka, K, Vereecke, L, van Loo, G, Pimentel-Muinos, FX.
The anti-inflammatory protein TNFAIP3/A20 binds the WD40 domain of ATG16L1 to control the autophagic response, NFKB/NF-kappaB activation and intestinal homeostasis
Autophagy 15, 1657-1659, 2019. (Epub 2019 Jun 11)

Slowicka, K, Serramito-Gomez, I, Boada-Romero, E, Martens, A, Sze, M, Petta, I, Vikkula, HK, De Rycke, R, Parthoens, E, Lippens, S, Savvides, SN, Wullaert, A, Vereecke, L, Pimentel-Muinos, FX, van Loo, G.
Physical and functional interaction between A20 and ATG16L1-WD40 domain in the control of intestinal homeostasis
Nat Commun 10, 1834, 2019. (Epub 2019 Apr 23)

Staal, J, Alci, K, De Schamphelaire, W, Vanhoucke, M, Beyaert, R.
Engineering a minimal cloning vector from a pUC18 plasmid backbone with an extended multiple cloning site
Biotechniques 66, 254-259, 2019. (Epub 2019 May 24)

Steeland, S, Vandenbroucke, RE.
Choroid plexus tumor necrosis factor receptor 1: A new neuroinflammatory piece of the complex Alzheimer's disease puzzle
Neural Regen Res 14, 1144-1147, 2019. (Epub 2019 Feb 26)

Stolwijk, C, Essers, I, van den Bosch, F, Dougados, M, Etcheto, A, van der Heijde, D, Landewe, R, Molto, A, van Tubergen, A, Boonen, A.
Validation of the self-administered comorbidity questionnaire adjusted for spondyloarthritis: results from the ASAS-COMOSPA study
Rheumatology (Oxford) 59, 1632-1639, 2019. (Epub 20109 Oct 26)

Stouten, V, Westhovens, R, Pazmino, S, De Cock, D, Van der Elst, K, Joly, J, Verschueren, P, Care, RAsg.
Effectiveness of different combinations of DMARDs and glucocorticoid bridging in early rheumatoid arthritis: two-year results of CareRA
Rheumatology (Oxford) 58, 2284-2294, 2019. (Epub 2019 Jun 24)

Svedberg, FR, Brown, SL, Krauss, MZ, Campbell, L, Sharpe, C, Clausen, M, Howell, GJ, Clark, H, Madsen, J, Evans, CM, Sutherland, TE, Ivens, AC, Thornton, DJ, Grencis, RK, Hussell, T, Cunoosamy, DM, Cook, PC, MacDonald, AS.
The lung environment controls alveolar macrophage metabolism and responsiveness in type 2 inflammation
Nat Immunol 20, 571-580, 2019. (Epub 2019 Apr 1)

Syx, D, De Wandele, I, Symoens, S, De Rycke, R, Hougrand, O, Voermans, N, De Paepe, A, Malfait, F.
Bi-allelic AEBP1 mutations in two patients with Ehlers-Danlos syndrome
Hum Mol Genet 28, 1853-1864, 2019. (Epub 2019 Jan 22)

Tamoutounour, S, Han, SJ, Deckers, J, Constantinides, MG, Hurabielle, C, Harrison, OJ, Bouladoux, N, Linehan, JL, Link, VM, Vujkovic-Cvijin, I, Perez-Chaparro, PJ, Rosshart, SP, Rehermann, B, Lazarevic, V, Belkaid, Y.
Keratinocyte-intrinsic MHCII expression controls microbiota-induced Th1 cell responses
Proc Natl Acad Sci U S A 116, 23643-23652, 2019. (Epub 2019 Oct 31)

Tanc, M, Cleenewerck, M, Kurdi, A, Roelandt, R, Declercq, W, De Meyer, G, Augustyns, K, Martinet, W, Van der Veken, P.
Synthesis and evaluation of novel benzotropolones as Atg4B inhibiting autophagy blockers
Bioorg Chem 87, 163-168, 2019. (Epub 2019 Mar 13)

Tang, D, Kang, R, Vanden Berghe, T, Vandenabeele, P, Kroemer, G.
The molecular machinery of regulated cell death
Cell Res 29, 347-364, 2019. (Epub 2019 Apr 6)

Tavernier, SJ, Athanasopoulos, V, Verloo, P, Behrens, G, Staal, J, Bogaert, DJ, Naesens, L, De Bruyne, M, Van Gassen, S, Parthoens, E, Ellyard, J, Cappello, J, Morris, LX, Van Gorp, H, Van Isterdael, G, Saeys, Y, Lamkanfi, M, Schelstraete, P, Dehoorne, J, et al..
A human immune dysregulation syndrome characterized by severe hyperinflammation with a homozygous nonsense Roquin-1 mutation
Nat Commun 10, 4779, 2019. (Epub 2019 oct 21)

Tibbitt, CA, Stark, JM, Martens, L, Ma, J, Mold, JE, Deswarte, K, Oliynyk, G, Feng, X, Lambrecht, BN, De Bleser, P, Nylen, S, Hammad, H, Arsenian Henriksson, M, Saeys, Y, Coquet, JM.
Single-Cell RNA Sequencing of the T Helper Cell Response to House Dust Mites Defines a Distinct Gene Expression Signature in Airway Th2 Cells
Immunity 51, 169-184, 2019. (Epub 2019 Jun 20)

Timmermans, S, Souffriau, J, Libert, C.
A General Introduction to Glucocorticoid Biology
Front Immunol 10, 1545, 2019. (Epub 2019 Jul 25)

Todorov, H, Cannoodt, R, Saelens, W, Saeys, Y.
Network Inference from Single-Cell Transcriptomic Data
Methods Mol Biol 1883, 235-249, 2019. (Epub 2018 Dec 14)

Todorov, H, Saeys, Y.
Computational approaches for high-throughput single-cell data analysis
FEBS J 286, 1451-1467, 2019. (Epub 2018 Jul 30)

Umansky, V, Adema, GJ, Baran, J, Brandau, S, Van Ginderachter, JA, Hu, X, Jablonska, J, Mojsilovic, S, Papadaki, HA, Pico de Coana, Y, Santegoets, KCM, Santibanez, JF, Serre, K, Si, Y, Sieminska, I, Velegraki, M, Fridlender, ZG.
Interactions among myeloid regulatory cells in cancer
Cancer Immunol Immunother 68, 645-660, 2019. (Epub 2018 Jul 12)

Underwood, J, De Francesco, D, Cole, JH, Caan, MWA, van Zoest, RA, Schmand, BA, Sharp, DJ, Sabin, CA, Reiss, P, Winston, A, COmorBidity in Relation to AIDS Collaboration and the, PacOiPof, Y. Study Group.
Validation of a Novel Multivariate Method of Defining HIV-Associated Cognitive Impairment
Open Forum Infect Dis 6, ofz198, 2019. (Epub 2019 May 3)

Uvyn, A, De Coen, R, De Wever, O, Deswarte, K, Lambrecht, BN, De Geest, BG.
Cell surface clicking of antibody-recruiting polymers to metabolically azide-labeled cancer cells
Chem Commun (Camb) 55, 10952-10955, 2019. (Epub 2109 Sep 10)

Vandamme, N, Berx, G.
From neural crest cells to melanocytes: cellular plasticity during development and beyond
Cell Mol Life Sci 76, 1919-1934, 2019. (Epub 2019 Mar 4)

Vanden Berghe, T, Hoste, E.
Paving the way for precision medicine v2.0 in intensive care by profiling necroinflammation in biofluids
Cell Death Differ 26, 8398, 2019. (Epub 2018 Sep 10)

Van den Bosch, F, Flipo, RM, Braun, J, Vastesaeger, N, Kachroo, S, Govoni, M.
Clinical and quality of life improvements with golimumab or infliximab in a real-life ankylosing spondylitis population: the QUO-VADIS study
Clin Exp Rheumatol 37, 199-207, 2019. (Epub 2018 Jul 19)

van der Heijde, D, Song, IH, Pangan, AL, Deodhar, A, van den Bosch, F, Maksymowych, WP, Kim, TH, Kishimoto, M, Everding, A, Sui, Y, Wang, X, Chu, AD, Sieper, J.
Efficacy and safety of upadacitinib in patients with active ankylosing spondylitis (SELECT-AXIS 1): a multicentre, randomised, double-blind, placebo-controlled, phase 2/3 trial
Lancet 394, 2108-2117, 2019. (Epub 2019 Nov 12)

Vandewalle, J, Steeland, S, Van Ryckeghem, S, Eggermont, M, Van Wonterghem, E, Vandenbroucke, RE, Libert, C.
A Study of Cecal Ligation and Puncture-Induced Sepsis in Tissue-Specific Tumor Necrosis Factor Receptor 1-Deficient Mice
Front Immunol 10, 2574, 2019. (Epub 2019 Nov 8)

Vande Walle, L, Stowe, IB, Sacha, P, Lee, BL, Demon, D, Fossoul, A, Van Hauwermeiren, F, Saavedra, PHV, Simon, P, Subr, V, Kostka, L, Stivala, CE, Pham, VC, Staben, ST, Yamazoe, S, Konvalinka, J, Kayagaki, N, Lamkanfi, M.
MCC950/CRID3 potently targets the NACHT domain of wild-type NLRP3 but not disease-associated mutants for inflammasome inhibition
PLoS Biol 17, e3000354, 2019. (Epub 2019 Sep 16)

Van Gorp, H, Lamkanfi, M.
The emerging roles of inflammasome-dependent cytokines in cancer development
EMBO Rep 20, e47575, 2019. (Epub 2019 May 17)

Van Gorp, H, Van Opdenbosch, N, Lamkanfi, M.
Inflammasome-Dependent Cytokines at the Crossroads of Health and Autoinflammatory Disease
Cold Spring Harb Perspect Biol 11, a028563, 2019. (Epub 2017 Oct 16)

Van Guyse, JFR, de la Rosa, VR, Lund, R, De Bruyne, M, De Rycke, R, Filippov, SK, Hoogenboom, R.
Striking Effect of Polymer End-Group on C-60 Nanoparticle Formation by High Shear Vibrational Milling with Alkyne-Functionalized Poly(2-oxazoline)s
Acs Macro Letters 8, 172-176, 2019. (Epub 2019 Jan 23)

Van Hoecke, L, Raes, L, Stremersch, S, Brans, T, Fraire, JC, Roelandt, R, Declercq, W, Vandenabeele, P, Raemdonck, K, Braeckmans, K, Saelens, X.
Delivery of Mixed-Lineage Kinase Domain-Like Protein by Vapor Nanobubble Photoporation Induces Necroptotic-Like Cell Death in Tumor Cells
International Journal of Molecular Sciences 20, E4254, 2019. (Epub 2019 Aug 30)

Vanholme, R, Sundin, L, Seetso, KC, Kim, H, Liu, X, Li, J, De Meester, B, Hoengenaert, L, Goeminne, G, Morreel, K, Haustraete, J, Tsai, HH, Schmidt, W, Vanholme, B, Ralph, J, Boerjan, W.
COSY catalyses trans-cis isomerization and lactonization in the biosynthesis of coumarins
Nat Plants 5, 1066-1075, 2019. (Epub 2019 Sep 9)

Van Hove, H, Martens, L, Scheyltjens, I, De Vlaminck, K, Pombo Antunes, AR, De Prijck, S, Vandamme, N, De Schepper, S, Van Isterdael, G, Scott, CL, Aerts, J, Berx, G, Boeckxstaens, GE, Vandenbroucke, RE, Vereecke, L, Moechars, D, Guilliams, M, Van Ginderachter, JA, Saeys, Y, Movahedi, K.
A single-cell atlas of mouse brain macrophages reveals unique transcriptional identities shaped by ontogeny and tissue environment
Nat Neurosci 22, 10211035, 2019. (Epub 2019 May 6)

Van Looveren, K, Van Boxelaere, M, Callaerts-Vegh, Z, Libert, C.
Cognitive dysfunction in mice lacking proper glucocorticoid receptor dimerization
PLoS One 14, e0226753, 2019. (Epub 2019 Dec 23)

Van Malderen, SJM, Van Acker, T, Laforce, B, De Bruyne, M, de Rycke, R, Asaoka, T, Vincze, L, Vanhaecke, F.
Three-dimensional reconstruction of the distribution of elemental tags in single cells using laser ablation ICP-mass spectrometry via registration approaches
Anal Bioanal Chem 411, 4849-4859, 2019. (Epub 2019 Feb 21)

Varasteh, Z, Mohanta, S, Li, Y, Lopez Armbruster, N, Braeuer, M, Nekolla, SG, Habenicht, A, Sager, HB, Raes, G, Weber, W, Hernot, S, Schwaiger, M.
Targeting mannose receptor expression on macrophages in atherosclerotic plaques of apolipoprotein E-knockout mice using (68)Ga-NOTA-anti-MMR nanobody: non-invasive imaging of atherosclerotic plaques
EJNMMI Res 9, 5, 2019. (Epub 2019 Jan 21)

Varkas, G, Ribbens, C, Louis, E, Van den Bosch, F, Lories, R, Vermeire, S, Elewaut, D, De Vos, M.
Expert consensus: practical algorithms for management of inflammatory bowel disease patients presenting with back pain or peripheral arthropathies
Aliment Pharmacol Ther 50, 1204-1213, 2019. (Epub 2019 Oct 25)

Veale, DJ, McGonagle, D, McInnes, IB, Krueger, JG, Ritchlin, CT, Elewaut, D, Kanik, KS, Hendrikx, T, Berstein, G, Hodge, J, Telliez, JB.
The rationale for Janus kinase inhibitors for the treatment of spondyloarthritis
Rheumatology (Oxford) 58, 197-205, 2019. (Epub 2018 Apr 3)

Venken, K, Jacques, P, Mortier, C, Labadia, ME, Decruy, T, Coudenys, J, et al., Van Gassen, S, Martens, L, Smith, D, Harcken, C, Wahle, J, Wang, CT, Verheugen, E, Schryvers, N, Varkas, G, Cypers, H, et al.,Van den Bosch, F, Saeys, Y, Nabozny, G, Elewaut D.
RORgammat inhibition selectively targets IL-17 producing iNKT and gammadelta-T cells enriched in Spondyloarthritis patients
Nat Commun 10, 9, 2019. (Epub 2019 Jan 2)

Verschueren, KHG, Blanchet, C, Felix, J, Dansercoer, A, De Vos, D, Bloch, Y, Van Beeumen, J, Svergun, D, Gutsche, I, Savvides, SN, Verstraete, K.
Structure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle
Nature 568, 571-575, 2019. (Epub 2019 Apr 3)

Vetters, J, van Helden, MJ, Wahlen, S, Tavernier, SJ, Martens, A, Fayazpour, F, Vergote, K, Vanheerswynghels, M, Deswarte, K, Van Moorleghem, J, De Prijck, S, Takahashi, N, Vandenabeele, P, Boon, L, van Loo, G, Vivier, E, Lambrecht, BN, Janssens, S.
The ubiquitin-editing enzyme A20 controls NK cell homeostasis through regulation of mTOR activity and TNF
J Exp Med 216, 2010-2023, 2019. (Epub 2019 Jul 11)

Vluymans, S, Mac Parthalain, N, Cornelis, C, Saeys, Y.
Weight selection strategies for ordered weighted average based fuzzy rough sets
Information Sciences 501, 155-171, 2019. (Epub 2019 May 29)

Voet, S, Prinz, M, van Loo, G.
Microglia in Central Nervous System Inflammation and Multiple Sclerosis Pathology
Trends Mol Med 25, 112-123, 2019. (Epub 2018 Dec 18)

Voet, S, Srinivasan, S, Lamkanfi, M, van Loo, G.
Inflammasomes in neuroinflammatory and neurodegenerative diseases
EMBO Mol Med 11, e10248, 2019. (Epub 2019 Apr 23)

Vriens, K, Christen, S, Parik, S, Broekaert, D, Yoshinaga, K, Talebi, A, Dehairs, J, Escalona-Noguero, C, Schmieder, R, Cornfield, T, Charlton, C, Romero-Perez, L, Rossi, M, Rinaldi, G, Orth, MF, Boon, R, Kerstens, A, Kwan, SY, Faubert, B, et al..
Evidence for an alternative fatty acid desaturation pathway increasing cancer plasticity
Nature 566, 403406, 2019. (Epub 2019 Feb 6)

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