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Selected IRC publications

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Naert, T, Vleminckx, K.
CRISPR/Cas9 disease models in zebrafish and Xenopus: The genetic renaissance of fish and frogs
Drug Discov Today Technol 28, 41-52, 2018. (Epub 2018 Jul 31)

Naert, T, Vleminckx, K.
Cancer Models in Xenopus tropicalis by CRISPR/Cas9 Mediated Knockout of Tumor Suppressors
Methods Mol Biol 1865, 147-161, 2018. (Epub 2018 Aug 28)

Naert, T, Vleminckx, K.
CRISPR/Cas9-Mediated Knockout of Rb1 in Xenopus tropicalis
Methods Mol Biol 1726, 177-193, 2018. (Epub 2018 Feb 22)

Naert, T, Vleminckx, K.
Genotyping of CRISPR/Cas9 Genome Edited Xenopus tropicalis
Methods Mol Biol 1865, 67-82, 2018. (Epub 2018 Aug 28)

Naert, T, Vleminckx, K.
Methods for CRISPR/Cas9 Xenopus tropicalis Tissue-Specific Multiplex Genome Engineering
Methods Mol Biol 1865, 33-54, 2018. (Epub 2018 Aug 28)

Nikiphorou, E, Ramiro, S, van der Heijde, D, Norton, S, Molto, A, Dougados, M, van den Bosch, F, Landewe, R, Force, A-CT.
Comorbidities in Spondyloarthritis associate with poor function, work disability and quality of life: Results from the ASAS-COMOSPA study
Arthritis Care Res (Hoboken) , in press, 2018. (Epub 2017 Nov 10)

Nikiphorou, E, van der Heijde, D, Norton, S, Landewe, RB, Molto, A, Dougados, M, Van den Bosch, FE, Ramiro, S, Collaborators.
Inequity in biological DMARD prescription for spondyloarthritis across the globe: results from the ASAS-COMOSPA study
Ann Rheum Dis 77, 3, 2018. (Epub 2017 Dec 8)

Noelanders, R, Vleminckx, K.
Cell Cycle Analysis of the Embryonic Brain of Fluorescent Reporter Xenopus tropicalis by Flow Cytometry
Methods Mol Biol 1865, 243-250, 2018. (Epub 2018 Aug 28)

Normand, S, Waldschmitt, N, Neerincx, A, Martinez-Torres, RJ, Chauvin, C, Couturier-Maillard, A, Boulard, O, Cobret, L, Awad, F, Huot, L, Ribeiro-Ribeiro, A, Lautz, K, Ruez, R, Delacre, M, Bondu, C, Guilliams, M, Scott, C, Segal, A, Amselem, S, et al..
Proteasomal degradation of NOD2 by NLRP12 in monocytes promotes bacterial tolerance and colonization by enteropathogens
Nat Commun 9, 5338, 2018. (Epub 2018 Dec 17)

Nuhn, L, Bolli, E, Massa, S, Vandenberghe, I, Movahedi, K, Devreese, B, Van Ginderachter, J, De Geest, BG.
Targeting protumoral tumor-associated macrophages with nanobody-functionalized nanogels through SPAAC ligation
Bioconjug Chem 29, 2394-2405, 2018. (Epub 2018 Jun 11)

Nuhn, L, De Koker, S, Van Lint, S, Zhong, Z, Catani, JP, Combes, F, Deswarte, K, Li, Y, Lambrecht, BN, Lienenklaus, S, Sanders, NN, David, SA, Tavernier, J, De Geest, BG.
Nanoparticle-Conjugate TLR7/8 Agonist Localized Immunotherapy Provokes Safe Antitumoral Responses
Adv Mater 30, 1803397, 2018. (Epub 2018 Oct 1)

Nuhn, L, Van Herck, S, Best, A, Deswarte, K, Kokkinopoulou, M, Lieberwirth, I, Koynov, K, Lambrecht, BN, De Geest, BG.
FRET Monitoring of Intracellular Ketal Hydrolysis in Synthetic Nanoparticles
Angew Chem Int Ed Engl 57, 10760-10764, 2018. (Epub 2018 Jul 25)

Nuhn, L, Van Hoecke, L, Deswarte, K, Schepens, B, Li, Y, Lambrecht, BN, De Koker, S, David, SA, Saelens, X, De Geest, BG.
Potent anti-viral vaccine adjuvant based on pH-degradable nanogels with covalently linked small molecule imidazoquinoline TLR7/8 agonist
Biomaterials 178, 643-651, 2018. (Epub 2018 Mar 16)

Obieglo, K, Schuijs, MJ, Ozir-Fazalalikhan, A, Otto, F, van Wijck, Y, Boon, L, Lambrecht, BN, Taube, C, Smits, HH.
Isolated Schistosoma mansoni eggs prevent allergic airway inflammation
Parasite Immunol 40, e12579, 2018. (Epub 2018 Aug 14)

Osorio, F, Lambrecht, BN, Janssens, S.
Antigen presentation unfolded: identifying convergence points between the UPR and antigen presentation pathways
Curr Opin Immunol 52, 100-107, 2018. (Epub 2018 May 10)

Osuchowski, MF, Ayala, A, Bahrami, S, Bauer, M, Boros, M, Cavaillon, JM, Chaudry, IH, Coopersmith, CM, Deutschman, C, Drechsler, S, Efron, P, Frostell, C, Fritsch, G, Gozdzik, W, Hellman, J, Huber-Lang, M, Inoue, S, Knapp, S, et al., Libert, C.
Minimum quality threshold in pre-clinical sepsis studies (MQTiPSS): an international expert consensus initiative for improvement of animal modeling in sepsis
Intensive Care Med Exp 6, 26, 2018. (Epub 2018 Aug 14)

Osuchowski, MF, Ayala, A, Bahrami, S, Bauer, M, Boros, M, Cavaillon, JM, Chaudry, IH, Coopersmith, CM, Deutschman, C, Drechsler, S, Efron, P, Frostell, C, Fritsch, G, Gozdzik, W, Hellman, J, Huber-Lang, M, Inoue, S, Knapp, S, et al., Libert, C.
Minimum Quality Threshold in Pre-Clinical Sepsis Studies (MQTiPSS): An International Expert Consensus Initiative for Improvement of Animal Modeling in Sepsis
Shock 50, 377-380, 2018. (Epub 2018 Aug 14)

Osuchowski, MF, Ayala, A, Bahrami, S, Bauer, M, Boros, M, Cavaillon, JM, Chaudry, IH, Coopersmith, CM, Deutschman, C, Drechsler, S, Efron, P, Frostell, C, Fritsch, G, Gozdzik, W, Hellman, J, Huber-Lang, M, Inoue, S, Knapp, S, Libert, C, et al..
Minimum Quality Threshold in Pre-Clinical Sepsis Studies (MQTiPSS): an international expert consensus initiative for improvement of animal modeling in sepsis
Infection 46, 687-691, 2018. (Epub 2018 Aug 14)

Peralta, D, Triguero, I, García, S, Saeys, Y, Benítez, JM, Herrera, F.
On the use of convolutional neural networks for robust classification of multiple fingerprint captures
Computer Vision and Pattern Recognition 33, 213-230, 2018. (Epub 2017 Nov 14)

Petta, I, Fraussen, J, Somers, V, Kleinewietfeld, M.
Interrelation of Diet, Gut Microbiome, and Autoantibody Production
Front Immunol 9, 439, 2018. (Epub 2018 Mar 6)

Plantamura, E, Dzutsev, A, Chamaillard, M, Djebali, S, Moudombi, L, Boucinha, L, Grau, M, Macari, C, Bauche, D, Dumitrescu, O, Rasigade, JP, Lippens, S, Plateroti, M, Kress, E, Cesaro, A, Bondu, C, Rothermel, U, Heikenwalder, M, Lina, G, et al..
MAVS deficiency induces gut dysbiotic microbiota conferring a proallergic phenotype
Proc Natl Acad Sci U S A 115, 10404-10409, 2018. (Epub 2018 Sep 24)

Post, S, Heijink, IH, Hesse, L, Koo, HK, Shaheen, F, Fouadi, M, Kuchibhotla, VNS, Lambrecht, BN, Van Oosterhout, AJM, Hackett, TL, Nawijn, MC.
Characterization of a lung epithelium specific E-cadherin knock-out model: Implications for obstructive lung pathology
Sci Rep 8, 13275, 2018. (Epub 2018 Sep 5)

Prabakaran, T, Bodda, C, Krapp, C, Zhang, BC, Christensen, MH, Sun, C, Reinert, L, Cai, Y, Jensen, SB, Skouboe, MK, Nyengaard, JR, Thompson, CB, Lebbink, RJ, Sen, GC, van Loo, G, Nielsen, R, Komatsu, M, Nejsum, LN, Jakobsen, MR, et al.
Attenuation of cGAS-STING signaling is mediated by a p62/SQSTM1-dependent autophagy pathway activated by TBK1
EMBO J 37, UNSP e97858, 2018. (Epub 2018 Mar 1)

Priem, D, Dondelinger, Y, Bertrand, MJM.
Monitoring RIPK1 Phosphorylation in the TNFR1 Signaling Complex
Methods Mol Biol 1857, 171-179, 2018. (Epub 2018 Aug 23)

Raaymakers, C, Verbrugghe, E, Stijlemans, B, Martel, A, Pasmans, F, Roelants, K.
The anuran skin peptide bradykinin mediates its own absorption across epithelial barriers of the digestive tract
Peptides 103, 84-89, 2018. (Epub 2018 Mar 20)

Remmerie, A, Scott, CL.
Macrophages and lipid metabolism
Cell Immunol 330, 27-42, 2018. (Epub 2018 Feb 2)

Renard, M, Vanhauwaert, S, Vanhomwegen, M, Rihani, A, Vandamme, N, Goossens, S, Berx, G, Van Vlierberghe, P, Haigh, JJ, Decaesteker, B, Van Laere, J, Lambertz, I, Speleman, F, Vandesompele, J, Willaert, A.
Expressed repetitive elements are broadly applicable reference targets for normalization of reverse transcription-qPCR data in mice
Sci Rep 8, 7642, 2018. (Epub 2018 May 16)

Rizzolio, S, Cagnoni, G, Battistini, C, Bonelli, S, Isella, C, Van Ginderachter, JA, Bernards, R, Di Nicolantonio, F, Giordano, S, Tamagnone, L.
Neuropilin-1 upregulation elicits adaptive resistance to oncogene-targeted therapies
J Clin Invest 128, 3976-3990, 2018. (Epub 2018 Jun 28)

Rodrigues Manica, S, Sepriano, A, Ramiro, S, Pimentel Santos, F, Putrik, P, Nikiphorou, E, Norton, S, Molto, A, Dougados, M, van der Heijde, D, Landewe, RBM, van den Bosch, FE, Boonen, A.
Work participation in spondyloarthritis across countries: analysis from the ASAS-COMOSPA study
Ann Rheum Dis 77, 1303-1310, 2018. (Epub 2018 Sep)

Roels, J, Aelterman, J, Luong, HQ, Lippens, S, Pizurica, A, Saeys, Y, Philips, W.
An overview of state-of-the-art image restoration in electron microscopy
J Microsc 271, 239-254, 2018. (Epub 2018 jun 8)

Rogiers, O, Holtappels, M, Siala, W, Lamkanfi, M, Van Bambeke, F, Lagrou, K, Van Dijck, P, Kucharikova, S.
Anidulafungin increases the antibacterial activity of tigecycline in polymicrobial Candida albicans/Staphylococcus aureus biofilms on intraperitoneally implanted foreign bodies
J Antimicrob Chemother 73, 2806-2814, 2018. (Epub 2018 Jul 13)

Ronca, R, Van Ginderachter, JA, Turtoi, A.
Paracrine interactions of cancer-associated fibroblasts, macrophages and endothelial cells: tumor allies and foes
Curr Opin Oncol 30, 45–53, 2018. (Epub 2017 Oct 27)

Saavedra, PHV, Huang, L, Ghazavi, F, Kourula, S, Vanden Berghe, T, Takahashi, N, Vandenabeele, P, Lamkanfi, M.
Apoptosis of intestinal epithelial cells restricts Clostridium difficile infection in a model of pseudomembranous colitis
Nat Commun 9, 4846, 2018. (Epub 2018 Nov 19)

Saelens, W, Cannoodt, R, Saeys, Y.
A comprehensive evaluation of module detection methods for gene expression data
Nat Commun 9, 1090, 2018. (Epub 2018 Mar 15)

Saeys, Y, Van Gassen, S, Lambrecht, B.
Response to Orlova et al. "Science not art: statistically sound methods for identifying subsets in multi-dimensional flow and mass cytometry data sets"
Nat Rev Immunol 18, 78, 2018. (Epub 2017 Dec 22)

Schietgat, L, Vens, C, Cerri, R, Fischer, CN, Costa, E, Ramon, J, Carareto, CMA, Blockeel, H.
A machine learning based framework to identify and classify long terminal repeat retrotransposons
PLoS Comput Biol 14, e1006097, 2018. (Epub 2018 Apr 23)

Scott, CL, Guilliams, M.
The role of Kupffer cells in hepatic iron and lipid metabolism
J Hepatol 69, 1197-1199, 2018. (Epub 2018 Jul 9)

Scott, CL, Guilliams, M.
Tissue Unit-ed: Lung Cells Team up to Drive Alveolar Macrophage Development
Cell 175, 898-900, 2018. (Epub 2018 Nov 1)

Scott, CL, T'Jonck, W, Martens, L, Todorov, H, Sichien, D, Soen, B, Bonnardel, J, De Prijck, S, Vandamme, N, Cannoodt, R, Saelens, W, Vanneste, B, Toussaint, W, De Bleser, P, Takahashi, N, Vandenabeele, P, et al., Lambrecht, BN, De Baetselier, P, Milling, SWF, Van Ginderachter, JA, Malissen, B, Berx, G, Beschin, A, Saeys, Y, Guilliams, M.
The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages
Immunity 49, 312-325, 2018. (Epub 2018 Jul 31)

Sharma, PK, Dmitriev, IP, Kashentseva, EA, Raes, G, Li, L, Kim, SW, Lu, ZH, Arbeit, JM, Fleming, TP, Kaliberov, SA, Goedegebuure, SP, Curiel, DT, Gillanders, WE.
Development of an adenovirus vector vaccine platform for targeting dendritic cells
Cancer Gene Ther 25, 1-2, 2018. (Epub 2017 Dec 15)

Sikela, JM, van Roy, F.
Changing the name of the NBPF/DUF1220 domain to the Olduvai domain
F1000Research 6, 2185, 2018. (Epub 2018 Jul 17)

Skrypek, N, Bruneel, K, Vandewalle, C, De Smedt, E, Soen, B, Loret, N, Taminau, J, Goossens, S, Vandamme, N, Berx, G.
ZEB2 stably represses RAB25 expression through epigenetic regulation by SIRT1 and DNMTs during epithelial-to-mesenchymal transition
Epigenetics Chromatin 11, 70, 2018. (Epub 2018 Nov 16)

Slowicka, K, van Loo, G.
Optineurin Functions for Optimal Immunity
Front Immunol 9, 769, 2018. (Epub 2018 Apr 10)

Song, L, Merceron, R, Gracia, B, Quintana, AL, Risseeuw, MDP, Hulpia, F, Cos, P, Ainsa, JA, Munier-Lehmann, H, Savvides, SN, Van Calenbergh, S.
Structure Guided Lead Generation towards non-chiral M. tuberculosis Thymidylate Kinase Inhibitors
J Med Chem 61, 2753-2775, 2018. (Epub 2018 Mar 6)

Souffriau, J, Eggermont, M, Van Ryckeghem, S, Van Looveren, K, Van Wyngene, L, Van Hamme, E, Vuylsteke, M, Beyaert, R, De Bosscher, K, Libert, C.
A screening assay for Selective Dimerizing Glucocorticoid Receptor Agonists and Modulators (SEDIGRAM) that are effective against acute inflammation
Sci Rep 8, 12894, 2018. (Epub 2018 Aug 27)

Souffriau, J, Libert, C.
Mechanistic insights into the protective impact of zinc on sepsis
Cytokine Growth Factor Rev 39, 92-101, 2018. (Epub 2017 Dec 22)

Sparkes, A, De Baetselier, P, Brys, L, Cabrito, I, Sterckx, YG, Schoonooghe, S, Muyldermans, S, Raes, G, Bucala, R, Vanlandschoot, P, Van Ginderachter, JA, Stijlemans, B.
Novel half-life extended anti-MIF nanobodies protect against endotoxic shock
FASEB J 32, 3411-3422, 2018. (Epub 2018 Jan 25)

Spiranec, K, Chen, W, Werner, F, Nikolaev, VO, Naruke, T, Koch, F, Werner, A, Eder-Negrin, P, Dieguez-Hurtado, R, Adams, RH, Baba, HA, Schmidt, H, Schuh, K, Skryabin, BV, Movahedi, K, Schweda, F, Kuhn, M.
Endothelial C-Type Natriuretic Peptide Acts on Pericytes to Regulate Microcirculatory Flow and Blood Pressure
Circulation 138, 494-508, 2018. (Epub 2018 Jul 31)

Staal, J, Beyaert, R.
Inflammation and NF-kappaB Signaling in Prostate Cancer: Mechanisms and Clinical Implications
Cells 7, 122, 2018. (Epub 2018 Aug 29)

Staal, J, Driege, Y, Haegman, M, Borghi, A, Hulpiau, P, Lievens, L, Gul, IS, Sundararaman, S, Goncalves, A, Dhondt, I, Pinzon, JH, Braeckman, BP, Technau, U, Saeys, Y, van Roy, F, Beyaert, R.
Ancient Origin of the CARD-Coiled Coil/Bcl10/MALT1-Like Paracaspase Signaling Complex Indicates Unknown Critical Functions
Front Immunol 9, 1136, 2018. (Epub 2018 May 24)

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