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Selected IRC publications

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Pauwels, AM, Trost, M, Beyaert, R, Hoffmann, E.
Patterns, Receptors, and Signals: Regulation of Phagosome Maturation
Trends Immunol 38, 407-422, 2017. (Epub 2017 Apr 14)

Peck, J, Saeys, Y, Goossens, B, Roels, J.
Lower bounds on the robustness to adversarial perturbations
Proc of Neural Information Processing Systems 30, , 2017. (Epub 2017)

Peirs, S, Frismantas, V, Matthijssens, F, Van Loocke, W, Pieters, T, Vandamme, N, Lintermans, B, Dobay, MP, Berx, G, Poppe, B, Goossens, S, Bornhauser, BC, Bourquin, JP, Van Vlierberghe, P.
Targeting BET proteins improves the therapeutic efficacy of BCL-2 inhibition in T-cell acute lymphoblastic leukemia
Leukemia 31, 2037-2047, 2017. (Epub 2017 Feb 3 )

Penberthy, KK, Rival, C, Shankman, LS, Raymond, MH, Zhang, J, Perry, JSA, Lee, CS, Han, CZ, Onengut-Gumuscu, S, Palczewski, K, Lysiak, JJ, Ravichandran, KS.
Context-dependent compensation among phosphatidylserine-recognition receptors
Sci Rep 7, 14623, 2017. (Epub 2017 Nov 9)

Peralta, D, Triguero, I, Garcia, S, Saeys, Y, Benitez, JM, Herrera, F.
Distributed incremental fingerprint identification with reduced database penetration rate using a hierarchical classification based on feature fusion and selection
Knowledge-Based Systems 126, 91-103, 2017. (Epub 2017 Jun 15)

Petta, I, Bougarne, N, Vandewalle, J, Dejager, L, Vandevyver, S, Ballegeer, M, Desmet, S, Thommis, J, De Cauwer, L, Lievens, S, Libert, C, Tavernier, J, De Bosscher, K.
Glucocorticoid Receptor-mediated transactivation is hampered by Striatin-3, a novel interaction partner of the receptor
Sci Rep 7, 8941, 2017. (Epub 2017 Aug 21)

Pieters, T, Haenebalcke, L, Bruneel, K, Vandamme, N, Hochepied, T, van Hengel, J, Wirth, D, Berx, G, Haigh, JJ, van Roy, F, Goossens, S.
Structure-function Studies in Mouse Embryonic Stem Cells Using Recombinase-mediated Cassette Exchange
J Vis Exp , 122, 2017. (Epub 2017 Apr 27)

Porte, R, Van Maele, L, Munoz-Wolf, N, Foligne, B, Dumoutier, L, Tabareau, J, Cayet, D, Gosset, P, Jonckheere, N, Van Seuningen, I, Chabalgoity, AJ, Simonet, M, Lamkanfi, M, Renauld, JC, Sirard, JC, Carnoy, C.
Flagellin-mediated protection against intestinal Yersinia pseudotuberculosis infection does not require interleukin-22
Infect Immun 85, e00806-16, 2017. (Epub 2016 Nov 21)

Pyfferoen, L, Brabants, E, Everaert, C, De Cabooter, N, Heyns, K, Deswarte, K, Vanheerswynghels, M, De Prijck, S, Waegemans, G, Dullaers, M, Hammad, H, De Wever, O, Mestdagh, P, Vandesompele, J, Lambrecht, BN, Vermaelen, KY.
The transcriptome of lung tumor-infiltrating dendritic cells reveals a tumor-supporting phenotype and a microRNA signature with negative impact on clinical outcome
Oncoimmunology 6, e1253655, 2017. (Epub 2016 Nov 8)

Remot, A, Descamps, D, Noordine, ML, Boukadiri, A, Mathieu, E, Robert, V, Riffault, S, Lambrecht, B, Langella, P, Hammad, H, Thomas, M.
Bacteria isolated from lung modulate asthma susceptibility in mice
ISME J 11, 1061-1074, 2017. (Epub 2017 Jan 3)

Roels, J, De Vylder, J, Aelterman, J, Saeys, Y, Philips, W.
Convolutional neural network pruning to accelerate membrane segmentation in electron microscopy
IEEE Xplore , 633-637, 2017. (Epub 2017 Jun 19)

Rojas-Rivera, D, Delvaeye, T, Roelandt, R, Nerinckx, W, Augustyns, K, Vandenabeele, P, Bertrand, MJM.
When PERK inhibitors turn out to be new potent RIPK1 inhibitors: critical issues on the specificity and use of GSK2606414 and GSK2656157
Cell Death Differ 24, 1100-1110, 2017. (Epub 2017 Apr 28)

Saavedra, PHV, Lamkanfi, M.
Immunology: Gut sensor halts viral attack
Nature 546, 606-608, 2017. (Epub 2017 Jun 29)

Schett, G, Lories, RJ, D'Agostino, MA, Elewaut, D, Kirkham, B, Soriano, ER, McGonagle, D.
Enthesitis: from pathophysiology to treatment
Nat Rev Rheumatol 13, 731-741, 2017. (Epub 2017 Nov 21)

Schoonaert, L, Rue, L, Roucourt, B, Timmers, M, Little, S, Chavez Gutierrez, L, Dewilde, M, Joyce, P, Curnock, A, Weber, P, Haustraete, J, Hassanzadeh-Ghassabeh, G, De Strooper, B, Van Den Bosch, L, Van Damme, P, Lemmens, R, Robberecht, W.
Identification and Characterisation of Nanobodies targeting the EphA4 receptor
J Biol Chem , in press, 2017. (Epub 2017 May 19)

Scott, CL, Bain, CC, Mowat, AM.
Isolation and Identification of Intestinal Myeloid Cells
Methods Mol Biol 1559, 223-239, 2017. (Epub 2017 Jan 17)

Sichien, D, Lambrecht, BN, Guilliams, M, Scott, CL.
Development of conventional dendritic cells: from common bone marrow progenitors to multiple subsets in peripheral tissues
Mucosal Immunol 10, 831-844, 2017. (Epub 2017 Feb 15)

Sikela, JM, van Roy, F.
A proposal to change the name of the NBPF/DUF1220 domain to the Olduvai domain
F1000Research 6, 2185, 2017. (Epub 2017 Dec 28)

Skrypek, N, Goossens, S, De Smedt, E, Vandamme, N, Berx, G.
Epithelial-to-Mesenchymal Transition: Epigenetic Reprogramming Driving Cellular Plasticity
Trends Genet 33, 943-959, 2017. (Epub 2017 Sep 14)

Song, J, Liu, XM, Li, JD, Liu, HD, Peng, Z, Liu, YL, Mei, LY, He, CF, Cai, XZ, Chen, HS, Vleminckx, K, Feng, Y.
Mechanism underlying synergic activation of Tyrosinase promoter by MITF and IRF4
International Journal of Clinical and Experimental Medicine 10, 4, 2017. (Epub 2017 Apr 15)

Sparkes, A, De Baetselier, P, Roelants, K, De Trez, C, Magez, S, Van Ginderachter, JA, Raes, G, Bucala, R, Stijlemans, B.
Reprint of: The non-mammalian MIF superfamily
Immunobiology 222, 858-867, 2017. (Epub 2017 May 30)

Sparkes, A, De Baetselier, P, Roelants, K, De Trez, C, Magez, S, Van Ginderachter, JA, Raes, G, Bucala, R, Stijlemans, B.
The non-mammalian MIF superfamily
Immunobiology 222, 473-482, 2017. (Epub 2016 Oct 12)

Speeckaert, R, Voet, S, Hoste, E, van Geel, N.
S100B is a potential disease activity marker in non-segmental vitiligo
J Invest Dermatol 137, 1445-1453, 2017. (Epub 2017 Feb 14)

Staal, J.
Applied Cultural and Social Studies are Needed for a Sustainable Reduction of Genetic Disease Incidence
European Journal of Sociology and Anthropology 2, 1, 2017. (Epub 2017 Jun 15)

Steeland, S, Van Ryckeghem, S, Van Imschoot, G, De Rycke, R, Toussaint, W, Vanhoutte, L, Vanhove, C, De Vos, F, Vandenbroucke, RE, Libert, C.
TNFR1 inhibition with a Nanobody protects against EAE development in mice
Sci Rep 7, 13646, 2017. (Epub 2017 Oct 20)

Stijlemans, B, De Baetselier, P, Caljon, G, Van Den Abbeele, J, Van Ginderachter, JA, Magez, S.
Nanobodies As Tools to Understand, Diagnose, and Treat African Trypanosomiasis
Front Immunol 8, 724, 2017. (Epub 2017 Jun 30)

Stijlemans, B, Radwanska, M, De Trez, C, Magez, S.
African Trypanosomes Undermine Humoral Responses and Vaccine Development: Link with Inflammatory Responses?
Front Immunol 8, 582, 2017. (Epub 2017 May 24)

Stryjewska, A, Dries, R, Pieters, T, Verstappen, G, Conidi, A, Coddens, K, Francis, A, Umans, L, van, IWF, Berx, G, van Grunsven, LA, Grosveld, F, Goossens, S, Haigh, JJ, Huylebroeck, D.
Zeb2 Regulates Cell Fate at the Exit from Epiblast State in Mouse Embryonic Stem Cells
Stem Cells 35, 611-625, 2017. (Epub 2016 Oct 14)

Szaruga, M, Munteanu, B, Lismont, S, Veugelen, S, Horre, K, Mercken, M, Saido, TC, Ryan, NS, De Vos, T, Savvides, SN, Gallardo, R, Schymkowitz, J, Rousseau, F, Fox, NC, Hopf, C, De Strooper, B, Chavez-Gutierrez, L.
Alzheimer's-Causing Mutations Shift Abeta Length by Destabilizing gamma-Secretase-Abetan Interactions
Cell 170, 443-456, 2017. (Epub 2017 Jul 27)

Tavernier, SJ, Osorio, F, Vandersarren, L, Vetters, J, Vanlangenakker, N, Van Isterdael, G, Vergote, K, De Rycke, R, Parthoens, E, van de Laar, L, Iwawaki, T, Del Valle, JR, Hu, CCA, Lambrecht, BN, Janssens, S.
Regulated IRE1-dependent mRNA decay sets the threshold for dendritic cell survival
Nat Cell Biol 19, 698-710, 2017. (Epub 2017 May 1)

Tavernier, SJ, Vanlangenakker, N, Vetters, J, Carmeliet, P, Janssens, S, Lambrecht, BN.
Opposing regulation and roles for PHD3 in lung dendritic cells and alveolar macrophages
J Leukoc Biol 102, 1115-1126, 2017. (Epub 2017 Jul 17)

Tima, HG, Al Dulayymi, JR, Denis, O, Lehebel, P, Baols, KS, Mohammed, MO, L'Homme, L, Sahb, MM, Potemberg, G, Legrand, S, Lang, R, Beyaert, R, Piette, J, Baird, MS, Huygen, K, Romano, M.
Inflammatory Properties and Adjuvant Potential of Synthetic Glycolipids Homologous to Mycolate Esters of the Cell Wall of Mycobacterium tuberculosis
J Innate Immun 9, 162-180, 2017. (Epub 2016 Nov 18)

Timmermans, S, Van Montagu, M, Libert, C.
Complete overview of protein-inactivating sequence variations in 36 sequenced mouse inbred strains
Proc Natl Acad Sci U S A 114, 9158-9163, 2017. (Epub 2017 Aug 7)

Tito, RY, Cypers, H, Joossens, M, Varkas, G, Van Praet, L, Glorieus, E, Van den Bosch, F, De Vos, M, Raes, J, Elewaut, D.
Dialister as microbial marker of disease activity in spondyloarthritis
Arthritis Rheumatol 69, 114-121, 2017. (Epub 2016 Dec 1)

Tran, HT, Fransen, M, Dimitrakopoulou, D, Van Imschoot, G, Willemarck, N, Vleminckx, K.
Caspase-9 has a non-apoptotic function in Xenopus embryonic primitive blood formation
J Cell Sci 130, 2371-2381, 2017. (Epub 2017 Jun 2)

Udhayakumar, VK, De Beuckelaer, A, McCaffrey, J, McCrudden, CM, Kirschman, JL, Vanover, D, Van Hoecke, L, Roose, K, Deswarte, K, De Geest, BG, Lienenklaus, S, Santangelo, PJ, Grooten, J, McCarthy, HO, De Koker, S.
Arginine-Rich Peptide-Based mRNA Nanocomplexes Efficiently Instigate Cytotoxic T Cell Immunity Dependent on the Amphipathic Organization of the Peptide
Adv Healthc Mater 6, 13, 2017. (Epub 2017 Apr 24)

Van Acker, A, Gronke, K, Biswas, A, Martens, L, Saeys, Y, Filtjens, J, Taveirne, S, Van Ammel, E, Kerre, T, Matthys, P, Taghon, T, Vandekerckhove, B, Plum, J, Dunay, IR, Diefenbach, A, Leclercq, G.
A Murine Intestinal Intraepithelial NKp46-Negative Innate Lymphoid Cell Population Characterized by Group 1 Properties
Cell Rep 19, 1431-1443, 2017. (Epub 2017 May 16)

Vanacker, H, Vetters, J, Moudombi, L, Caux, C, Janssens, S, Michallet, MC.
Emerging Role of the Unfolded Protein Response in Tumor Immunosurveillance
Trends Cancer 3, 491-505, 2017. (Epub 2017 Jul)

Van Cauwenbergh, C, Van Schil, K, Cannoodt, R, Bauwens, M, Van Laethem, T, De Jaegere, S, Steyaert, W, Sante, T, Menten, B, Leroy, BP, Coppieters, F, De Baere, E.
arrEYE: a customized platform for high-resolution copy number analysis of coding and noncoding regions of known and candidate retinal dystrophy genes and retinal noncoding RNAs
Genet Med 19, 457-466, 2017. (Epub 2016 Sep 8)

Van Damme, T, Gardeitchik, T, Mohamed, M, Guerrero-Castillo, S, Freisinger, P, Guillemyn, B, Kariminejad, A, Dalloyaux, D, van Kraaij, S, Lefeber, DJ, Syx, D, Steyaert, W, De Rycke, R, Hoischen, A, Kamsteeg, EJ, Wong, SY, van Scherpenzeel, M, Jamali, P, Brandt, U, et al..
Mutations in ATP6V1E1 or ATP6V1A Cause Autosomal-Recessive Cutis Laxa
Am J Hum Genet 100, 216-227, 2017. (Epub 2017 Feb 2)

Vandenabeele, P, Riquet, F, Cappe, B.
Necroptosis: (Last) Message in a Bubble
Immunity 47, 1-3, 2017. (Epub 2017 Jul 18)

Vanden Berghe, T, Kaiser, WJ.
RIPK1 prevents aberrant ZBP1-initiated necroptosis
Oncotarget 8, 1-2, 2017. (Epub 2017 Jan 3)

Van den Bosch, F, Ostor, AJK, Wassenberg, S, Chen, N, Wang, C, Garg, V, Kalabic, J.
Impact of Participation in the Adalimumab (Humira) Patient Support Program on Rheumatoid Arthritis Treatment Course: Results from the PASSION Study
Rheumatol Ther 4, 85-96, 2017. (Epub 2017 Mar 30)

Vandenwijngaert, S, Swinnen, M, Walravens, AS, Beerens, M, Gillijns, H, Caluwe, E, Tainsh, RE, Nathan, DI, Allen, K, Brouckaert, P, Bartunek, J, Scherrer-Crosbie, M, Bloch, KD, Bloch, DB, Janssens, SP, Buys, ES.
Decreased Soluble Guanylate Cyclase Contributes To Cardiac Dysfunction Induced By Chronic Doxorubicin Treatment In Mice
Antioxid Redox Signal 26, 153-164, 2017. (Epub 2016 Aug 9)

Van der Borght, K, Scott, CL, Nindl, V, Bouche, A, Martens, L, Sichien, D, Van Moorleghem, J, Vanheerswynghels, M, De Prijck, S, Saeys, Y, Ludewig, B, Gillebert, T, Guilliams, M, Carmeliet, P, Lambrecht, BN.
Myocardial Infarction Primes Autoreactive T Cells through Activation of Dendritic Cells
Cell Rep 18, 3005-3017, 2017. (Epub 2017 Mar 21)

Vandereyken, M, Jacques, S, Van Overmeire, E, Amand, M, Rocks, N, Delierneux, C, Singh, P, Singh, M, Ghuysen, C, Wathieu, C, Zurashvili, T, Sounni, NE, Moutschen, M, Gilles, C, Oury, C, Cataldo, D, Van Ginderachter, JA, Rahmouni, S.
Dusp3 deletion in mice promotes experimental lung tumour metastasis in a macrophage dependent manner
PLoS One 12, e0185786, 2017. (Epub 2017 Oct 11)

Vandereyken, MM, Singh, P, Wathieu, CP, Jacques, S, Zurashvilli, T, Dejager, L, Amand, M, Musumeci, L, Singh, M, Moutschen, MP, Libert, C, Rahmouni, S.
Dual-Specificity Phosphatase 3 Deletion Protects Female, but Not Male, Mice from Endotoxemia-Induced and Polymicrobial-Induced Septic Shock
J Immunol 199, 2515-2527, 2017. (Epub 2017 Aug 28)

van der Heijde, D, Dougados, M, Landewe, R, Sieper, J, Maksymowych, WP, Rudwaleit, M, Van den Bosch, F, Braun, J, Mease, PJ, Kivitz, AJ, Walsh, J, Davies, O, Bauer, L, Hoepken, B, Peterson, L, Deodhar, A.
Sustained efficacy, safety and patient-reported outcomes of certolizumab pegol in axial spondyloarthritis: 4-year outcomes from RAPID-axSpA
Rheumatology (Oxford) 56, 1498-1509, 2017. (Epub 2017 Sep 1)

Vandersarren, L, Bosteels, C, Vanheerswynghels, M, Moon, JJ, Easton, AJ, Van Isterdael, G, Janssens, S, Lambrecht, BN, van Helden, MJ.
Epitope mapping and kinetics of CD4 T cell immunity to pneumonia virus of mice in the C57BL/6 strain
Sci Rep 7, 3472, 2017. (Epub 2017 Jun 14)

van Malderen, SJM, Laforce, B, Van Acker, T, Nys, C, De Rijcke, M, de Rycke, R, De Bruyne, M, Boone, MN, De Schamphelaere, K, Borovinskaya, O, De Samber, B, Vincze, L, Vanhaecke, F.
Three-Dimensional Reconstruction of the Tissue-Specific Multielemental Distribution within Ceriodaphnia dubia via Multimodal Registration Using Laser Ablation ICP-Mass Spectrometry and X-ray Spectroscopic Techniques
Analytical Chemistry 89, 4161-4168, 2017. (Epub 2017 Apr 4)

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