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Selected IRC publications

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Ruyssinck, J, Huynh-Thu, VA, Geurts, P, Dhaene, T, Demeester, P, Saeys, Y.
NIMEFI: Gene regulatory network inference using multiple ensemble feature importance algorithms
PLoS One 9, e92709, 2014. (Epub 2014 Mar 25)

Schepens, B, Sedeyn, K, Vande Ginste, L, De Baets, S, Schotsaert, M, Roose, K, Houspie, L, Van Ranst, M, Gilbert, B, van Rooijen, N, Fiers, W, Piedra, P, Saelens, X.
Protection and mechanism of action of a novel human respiratory syncytial virus vaccine candidate based on the extracellular domain of small hydrophobic protein
EMBO Mol Med 6, 1436-1454, 2014. (Epub 2014 Oct 8)

Scott, CL, Bain, CC, Wright, PB, Sichien, D, Kotarsky, K, Persson, EK, Luda, K, Guilliams, M, Lambrecht, BN, Agace, WW, Milling, SW, Mowat, AM.
CCR2CD103 intestinal dendritic cells develop from DC-committed precursors and induce interleukin-17 production by T cells
Mucosal Immunol 8, 327-339, 2014. (Epub 2014 Aug 20)

Scott, CL, Henri, S, Guilliams, M.
Mononuclear phagocytes of the intestine, the skin, and the lung
Immunol Rev 262, 9-24, 2014. (Epub 2014 Oct 15)

Scott, CL, Murray, TF, Beckham, KS, Douce, G, Mowat, AM.
Signal Regulatory Protein alpha (SIRPalpha) regulates the homeostasis of CD103 CD11b DCs in the intestinal lamina propria
Eur J Immunol 44, 3658-68, 2014. (Epub 2014 Sep 19)

Silence, K, Dreier, T, Moshir, M, Ulrichts, P, Gabriels, SME, Saunders, M, Wajant, H, Brouckaert, P, Huyghe, L, Van Hauwermeiren, T, Thibault, A, De Haard, HJ.
ARGX-110, a highly potent antibody targeting CD70, eliminates tumors via both enhanced ADCC and immune checkpoint blockade
mAbs 6, 523-532, 2014. (Epub 2013 Dec 6)

Sipieter, F, Ladik, M, Vandenabeele, P, Riquet, F.
Shining light on cell death processes - a novel biosensor for necroptosis, a newly described cell death program
Biotechnol J 9, 224-240, 2014. (Epub 2014 Jan 3)

Steeland, S, Puimege, L, Vandenbroucke, RE, Van Hauwermeiren, F, Haustraete, J, Devoogdt, N, Hulpiau, P, Leroux-Roels, G, Laukens, D, Meuleman, P, De Vos, M, Libert, C.
Generation and characterization of small single domain antibodies inhibiting human TNF receptor 1
J Biol Chem 290, 4022-4037, 2014. (Epub 2014 Dec 23)

Svandova, E, Lesot, H, Vanden Berghe, T, Tucker, AS, Sharpe, PT, Vandenabeele, P, Matalova, E.
Non-apoptotic functions of caspase-7 during osteogenesis
Cell Death Dis 5, e1366, 2014. (Epub 2014 Aug 14)

Takahashi, N, Vereecke, L, Bertrand, MJ, Duprez, L, Berger, SB, Divert, T, Goncalves, A, Sze, M, Gilbert, B, Kourula, S, Goossens, V, Lefebvre, S, Gunther, C, Becker, C, Bertin, J, Gough, PJ, Declercq, W, van Loo, G, Vandenabeele, P.
RIPK1 ensures intestinal homeostasis by protecting the epithelium against apoptosis
Nature 513, 95-99, 2014. (Epub 2014 Sep 4)

Tatari, MN, De Craene, B, Soen, B, Taminau, J, Vermassen, P, Goossens, S, Haigh, K, Cazzola, S, Lambert, J, Huylebroeck, D, Haigh, JJ, Berx, G.
ZEB2-transgene expression in the epidermis compromises the integrity of the epidermal barrier through the repression of different tight junction proteins
Cell Mol Life Sci 71, 3599-3609, 2014. (Epub 2014 Feb 27)

Tegtmeyer, LC, Rust, S, van Scherpenzeel, M, Ng, BG, Losfeld, ME, Timal, S, Raymond, K, He, P, Ichikawa, M, Veltman, J, Huijben, K, Shin, YS, Sharma, V, Adamowicz, M, Lammens, M, Reunert, J, Witten, A, Schrapers, E, Matthijs, G, Jaeken, J, Rymen, D, Stojkovic, T, Laforet, P, Petit, F, Aumaitre, O, Czarnowska, E, Piraud, M, Podskarbi, T, Stanley, CA, Matalon, R, Burda, P, Seyyedi, S, Debus, V, Socha, P, Sykut-Cegielska, J, van Spronsen, F, de Meirleir, L, Vajro, P, DeClue, T, Ficicioglu, C, Wada, Y, Wevers, RA, Vanderschaeghe, D, Callewaert, N, Fingerhut, R, van Schaftingen, E, Freeze, HH, Morava, E, Lefeber, DJ, Marquardt, T.
Multiple phenotypes in phosphoglucomutase 1 deficiency
N Engl J Med 370, 533-542, 2014. (Epub 2014 Feb 6)

Titeca, K, Aerts, L, Krols, M, Vandersarren, L, Akay, O, Yilmaz, S, Hristozova, N, Janiak, M.
From challenges to perspectives: Reflections of young scientists on the current state of academic research
EMBO Rep 15, 1010-1014, 2014. (Epub 2014 Sep 12)

Tran, HT, Vleminckx, K.
Design and use of transgenic reporter strains for detecting activity of signaling pathways in Xenopus
Methods 66, 422-432, 2014. (Epub 2013 Jun 28)

Vandamme, N, Berx, G.
Melanoma cells revive an embryonic transcriptional network to dictate phenotypic heterogeneity
Front Oncol 4, 1-6, 2014. (Epub 2014 Dec 9)

van de Laar, L, Lambrecht, BN.
How to generate large numbers of CD103+ dendritic cells
Blood 124, 3036-3038, 2014. (Epub 2014 Nov 13)

Vanden Berghe, T, Demon, D, Bogaert, P, Vandendriessche, B, Goethals, A, Depuydt, B, Vuylsteke, M, Roelandt, R, Van Wonterghem, E, Vandenbroecke, J, Choi, SM, Meyer, E, Krautwald, S, Declercq, W, Takahashi, N, Cauwels, A, Vandenabeele, P.
Simultaneous targeting of Interleukin-1 and -18 is required for protection against inflammatory and septic shock
Am J Respir Crit Care Med 189, 282-291, 2014. (Epub 2014 Jan 23)

Vanden Berghe, T, Linkermann, A, Jouan-Lanhouet, S, Walczak, H, Vandenabeele, P.
Regulated necrosis: the expanding network of non-apoptotic cell death pathways
Nat Rev Mol Cell Biol 15, 135-147, 2014. (Epub 2014 Jan 23)

Vandenbroucke, RE, Libert, C.
Is there new hope for therapeutic matrix metalloproteinase inhibition?
Nat Rev Drug Discov , 904-927, 2014. (Epub 2014 Nov 7)

Vandenbroucke, RE, Vanlaere, I, Van Hauwermeiren, F, Van Wonterghem, E, Wilson, C, Libert, C.
Pro-inflammatory effects of matrix metalloproteinase 7 in acute inflammation
Mucosal Immunol 7, 579-588, 2014. (Epub 2013 Oct 16)

Vandendriessche, B, Goethals, A, Simats, A, Van Hamme, E, Brouckaert, P, Cauwels, A.
MAPK-activated protein kinase 2-deficiency causes hyperacute tumor necrosis factor-induced inflammatory shock
BMC Physiol 14, 5, 2014. (Epub 2014 Sep 4)

Vandendriessche, B, Peperstraete, H, Rogge, E, Cauwels, P, Hoste, E, Stiedl, O, Brouckaert, P, Cauwels, A.
A multiscale entropy-based tool for scoring severity of systemic inflammation
Crit Care Med 42, e560-569, 2014. (Epub 2014 Apr 8)

Vandevyver, S, Dejager, L, Libert, C.
Comprehensive overview of the structure and regulation of the glucocorticoid receptor
Endocr Rev 35, 671-693, 2014. (Epub 2014 Jun 17)

Vandevyver, S, Dejager, L, Vandenbroucke, RE, Libert, C.
An acute phase protein ready to go therapeutic in sepsis
EMBO Mol Med 6, 2-3, 2014. (Epub 2014 Jan 9)

Vande Walle, L, Van Opdenbosch, N, Jacques, P, Fossoul, A, Verheugen, E, Vogel, P, Beyaert, R, Elewaut, D, Kanneganti, TV, van Loo, G, Lamkanfi, M.
Negative regulation of the NLRP3 inflammasome by A20 protects against arthritis
Nature 512, 69-73, 2014. (Epub 2014 Jun 29)

Vandewynckel, YP, De Rycke, R, Bogaerts, E, Van Vlierberghe, H.
Intestinal metaplasia in an orthotopic mouse model for hepatocellular carcinoma
Dig Liver Dis 46, e17, 2014. (Epub 2014 Jul 30)

Vandewynckel, YP, Laukens, D, Bogaerts, E, Paridaens, A, Van den Bussche, A, Verhelst, X, Van Steenkiste, C, Descamps, B, Vanhove, C, Libbrecht, L, De Rycke, R, Lambrecht, BN, Geerts, A, Janssens, S, Van Vlierberghe, H.
Modulation of the unfolded protein response impedes tumor cell adaptation to proteotoxic stress: a PERK for hepatocellular carcinoma therapy
Hepatol Int 9, 93-104, 2014. (Epub 2014 Oct 1)

Vandewynckel, YP, Laukens, D, Geerts, A, Vanhove, C, Descamps, B, Colle, I, Devisscher, L, Bogaerts, E, Paridaens, A, Verhelst, X, Van Steenkiste, C, Libbrecht, L, Lambrecht, BN, Janssens, S, Van Vlierberghe, H.
Therapeutic effects of artesunate in hepatocellular carcinoma: repurposing an ancient antimalarial agent
Eur J Gastroenterol Hepatol 26, 861-870, 2014. (Epub 2014 Jul)

Van Hauwermeiren, F, Vandenbroucke, RE, Grine, L, Lodens, S, Van Wonterghem, E, De Rycke, R, De Geest, N, Hassan, B, Libert, C.
TNFR1-induced lethal inflammation is mediated by goblet and Paneth cell dysfunction
Mucosal Immunol 8, 828-840, 2014. (Epub 2014 Nov 26)

Van Hauwermeiren, F, Vandenbroucke, RE, Grine, L, Puimege, L, Van Wonterghem, E, Zhang, H, Libert, C.
Antisense oligonucleotides against TNFR1 prevent toxicity of TNF/IFNgamma treatment in mouse tumor models
Int J Cancer 135, 742-750, 2014. (Epub 2013 Dec 31)

Vanhee, S, De Mulder, K, Van Caeneghem, Y, Verstichel, G, Van Roy, N, Menten, B, Velghe, I, Philippe, J, De Bleser, D, Lambrecht, BN, Taghon, T, Leclercq, G, Kerre, T, Vandekerckhove, B.
In vitro human embryonic stem cell hematopoiesis mimics MYB-independent yolk sac hematopoiesis
Haematologica 100, 157-166, 2014. (Epub 2014 Nov 7)

Vanholme, B, Vanholme, R, Turumtay, H, Goeminne, G, Cesarino, I, Goubet, F, Morreel, K, Rencoret, J, Bulone, V, Hooijmaijers, C, De Rycke, R, Gheysen, G, Ralph, J, De Block, M, Meulewaeter, F, Boerjan, W.
Accumulation of N-Acetylglucosamine Oligomers in the Plant Cell Wall Affects Plant Architecture in a Dose-Dependent and Conditional Manner
Plant Physiology 165, 290-308, 2014. (Epub 2014 May)

Van Roy, F.
Beyond E-cadherin: roles of other cadherin superfamily members in cancer
Nat Rev Cancer 14, 121-134, 2014. (Epub 2014 Jan 20)

Vanthournout, B, Deswarte, K, Hammad, H, Bilde, T, Lambrecht, B, Hendrickx, F.
Flow cytometric sexing of spider sperm reveals an equal sperm production ratio in a female-biased species
Biol Lett 10, 20140159, 2014. (Epub 2014 May)

Venken, K, Seeuws, S, Zabeau, L, Jacques, P, Decruy, T, Coudenys, J, Verheugen, E, Windels, F, Catteeuw, D, Drennan, M, Van Calenbergh, S, Lambrecht, BN, Yoshimura, A, Tavernier, J, Elewaut, D.
A bidirectional crosstalk between iNKT cells and adipocytes mediated by leptin modulates susceptibility for T cell mediated hepatitis
J Hepatol 60, 175-182, 2014. (Epub 2013 Aug 20)

Vereecke, L, Vieira-Silva, S, Billiet, T, van Es, JH, Mc Guire, C, Slowicka, K, Sze, M, van den Born, M, De Hertogh, G, Clevers, H, Raes, J, Rutgeerts, P, Vermeire, S, Beyaert, R, van Loo, G.
A20 controls intestinal homeostasis through cell-specific activities
Nat Comm 5, 5103, 2014. (Epub 2014 Sep 30)

Verhelst, K, van Loo, G, Beyaert, R.
A20: attractive without showing cleavage
EMBO Rep 15, 734-735, 2014. (Epub 2014 May 30)

Vermassen, T, Van Praet, C, Lumen, N, Decaestecker, K, Vanderschaeghe, D, Callewaert, N, Villeirs, G, Hoebeke, P, Van Belle, S, Rottey, S, Delanghe, J.
Urinary prostate protein glycosylation profiling as a diagnostic biomarker for prostate cancer
Prostate 75, 314-322, 2014. (Epub 2014 Oct 30)

Vermassen, T, Van Praet, C, Vanderschaeghe, D, Maenhout, T, Lumen, N, Callewaert, N, Hoebeke, P, Van Belle, S, Rottey, S, Delanghe, J.
Capillary electrophoresis of urinary prostate glycoproteins assists in the diagnosis of prostate cancer
Electrophoresis 35, 1017-1024, 2014. (Epub 2013 Nov 20)

Verstrepen, L, Beyaert, R.
Receptor proximal kinases in NF-?B signaling as potential therapeutic targets in cancer and inflammation
Biochem Pharmacol 92, 519-529, 2014. (Epub 2014 Nov 27)

Verstrepen, L, Carpentier, I, Beyaert, R.
The biology of A20-binding inhibitors of NF-kappaB activation (ABINs)
In The multiple therapeutic targets of A20 (Ferran, C, ed.), Landes Bioscience and Springer Science+Business Media , Adv Exp Med Biol 809, 13-31, 2014. (Epub 2014 Jan)

Volckaert, T, De Langhe, S.
Lung epithelial stem cells and their niches: Fgf10 takes center stage
Fibrogenesis Tissue Repair 7, 8, 2014. (Epub 2014 May 8)

Williams, GR, Fierens, K, Preston, SG, Lunn, D, Rysnik, O, De Prijck, S, Kool, M, Buckley, HC, Lambrecht, BN, O’Hare, D, Austyn, JM.
Immunity induced by a broad class of inorganic crystalline materials is directly controlled by their chemistry
J Exp Med 211, 1019-1025, 2014. (Epub 2014 May 5)

Xu, TD, Dai, N, Chen, JS, Nagawa, S, Cao, M, Li, HJ, Zhou, ZM, Chen, X, De Rycke, R, Rakusova, H, Wang, WY, Jones, AM, Friml, J, Patterson, SE, Bleecker, AB, Yang, ZB.
Cell Surface ABP1-TMK Auxin-Sensing Complex Activates ROP GTPase Signaling
Science 343, 1025-1028, 2014. (Epub 2014 Feb 28)

Zabeau, L, Jensen, CJ, Seeuws, S, Venken, K, Verhee, A, Catteeuw, D, van Loo, G, Chen, H, Walder, K, Hollis, J, Foote, S, Morris, MJ, Van der Heyden, J, Peelman, F, Oldfield, BJ, Rubio, JP, Elewaut, D, Tavernier, J.
Leptinís metabolic and immune functions can be uncoupled at the ligand/receptor interaction level
Cell Mol Life Sci 72, 629-644, 2014. (Epub 2014 Aug 7)

Zhang, S, Li, J, Lea, R, Vleminckx, K, Amaya, E.
Fezf2 promotes neuronal differentiation through localised activation of Wnt/beta-catenin signalling during forebrain development
Development 141, 4794-4805, 2014. (Epub 2014 Dec 15)

Almeida-Souza, L, Asselbergh, B, De Winter, V, Goethals, S, Timmerman, V, Janssens, S.
HSPB1 facilitates the formation of non-centrosomal microtubules
PLoS One 8, e66541, 2013. (Epub 2013 Jun 24)

Bals, R, Ricou Yanmaz, J, Schaffter, C, Pannetier, C, Kamel, N, Middelveld, R, Dahlen, SE, Lambrecht, BN, Nemery, B, Nicod, L, Holgate, S.
The European Respiratory Society fellowship programme: supporting young careers and building networks
Eur Respir J 42, 564-567, 2013. (Epub 2013 Sep 4)

Beck, IM, Drebert, ZJ, Hoya-Arias, R, Bahar, AA, Devos, M, Clarisse, D, Desmet, S, Bougarne, N, Ruttens, B, Gossye, V, Denecker, G, Lievens, S, Bracke, M, Tavernier, J, Declercq, W, Gevaert, K, Vanden Berghe, W, Haegeman, G, De Bosscher, K.
Compound A, a selective glucocorticoid receptor modulator, enhances heat shock protein hsp70 gene promoter activation
PLoS One 8, e69115, 2013. (Epub 2013 Jul 30)

Beyaert, R, Beaugerie, L, Van Assche, G, Brochez, L, Renauld, JC, Viguierg, M, Cocquyth, V, Jerusalemi, G, Machiels, JP, Prenenk, H, Masson, P, Louis, E, De Keyser, F.
Cancer risk in immune-mediated inflammatory diseases
Mol Cancer 12, 98, 2013. (Epub 2013 Aug 29)

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