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Selected IRC publications

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Demon, D, Van Damme, P, Vanden Berghe, T, Deceuninck, A, Van Durme, J, Verspurten, J, Helsens, K, Impens, F, Wejda, M, Schymkowitz, J, Rousseau, F, Madder, A, Vandekerckhove, J, Declercq, W, Gevaert, K, Vandenabeele, P.
Proteome-wide substrate analysis indicates substrate exclusion as a mechanism to generate caspase-7 versus caspase-3 specificity
Mol Cell Proteomics 8, 2700-2714, 2009. (Epub 2009 Sep 16)

Demon, D, Van Damme, P, Vanden Berghe, T, Vandekerckhove, J, Declercq, W, Gevaert, K, Vandenabeele, P.
Caspase substrates: easily caught in deep waters?
Trends Biotechnol 27, 680-688, 2009. (Epub 2009 Oct 28)

Derudder, E, Cadera, EJ, Vahl, JC, Wang, J, Fox, CJ, Zha, S, van Loo, G, Pasparakis, M, Schlissel, MS, Schmidt-Supprian, M, Rajewsky, K.
Development of immunoglobulin lambda-chain-positive B cells, but not editing of immunoglobulin kappa-chain, depends on NF-kappaB signals
Nat Immunol 10, 647-654, 2009. (Epub 2009 May 3)

De Rybel, B, Audenaert, D, Vert, G, Rozhon, W, Mayerhofer, J, Peelman, F, Coutuer, S, Denayer, T, Jansen, L, Nguyen, L, Vanhoutte, I, Beemster, GT, Vleminckx, K, Jonak, C, Chory, J, Inze, D, Russinova, E, Beeckman, T.
Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling
Chem Biol 16, 594-604, 2009. (Epub ---)

De Schutter, K, Lin, YC, Tiels, P, Van Hecke, A, Glinka, S, Weber-Lehmann, J, Rouze, P, Van de Peer, Y, Callewaert, N.
Genome sequence of the recombinant protein production host Pichia pastoris
Nat Biotechnol 27, 561-566, 2009. (Epub 2009 May 24)

Dhaese, I, Vanneste, G, Sips, P, Buys, E, Brouckaert, P, Lefebvre, RA.
Small intestinal motility in soluble guanylate cyclase a1 knockout mice
Naunyn S Arch Pharmacol 379, 473-487, 2009. (Epub 2008 Dec 4)

Di Valentin, E, Crahay, C, Garbacki, N, Hennuy, B, Gueders, M, Noel, A, Foidart, JM, Grooten, J, Colige, A, Piette, J, Cataldo, D.
New asthma biomarkers: lessons from murine models of acute and chronic asthma
Am J Physiol Lung Cell Mol Physiol 296, L185-197, 2009. (Epub 2008 Nov 21)

Duprez, L, Vanlangenakker, N, Festjens, N, Van Herreweghe, F, Vanden Berghe, T, Vandenabeele, P.
Necrosis: Molecular mechanisms and physiological roles
In Essentials of Apoptosis. (Yin, X-M & Dong, Z, eds.), Humana Press, 599-633, 2009. (Epub 2009)

Duprez, L, Wirawan, E, Vanden Berghe, T, Vandenabeele, P.
Major cell death pathways at a glance
Microbes Infect 11, 1050-1062 , 2009. (Epub 2009 Sep 3)

Fiers, W, De Filette, M, El Bakkouri, K, Schepens, B, Roose, K, Schotsaert, M, Birkett, A, Saelens, X.
M2e-based universal influenza A vaccine
Vaccine 27, 6280-6283, 2009. (Epub 2009 Oct 23)

Galluzzi, L, Aaronson, SA, Abrams, J, (et al.), Marine, JC, (et al.), Vandenabeele, P, (et al.), Yuan, J, Zhivotovsky, B, Kroemer, G.
Guidelines for the use and interpretation of assays for monitoring cell death in higher eukaryotes
Cell Death Differ 16, 1093-1107, 2009. (Epub 2009 Apr 17)

Ghesquiere, B, Colaert, N, Helsens, K, Dejager, L, Vanhaute, C, Verleysen, K, Kas, K, Timmerman, E, Goethals, M, Libert, C, Vandekerckhove, J, Gevaert, K.
In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography
Mol Cell Proteomics 8, 2642-2652, 2009. (Epub 2009 Sep 9)

Huang, L, De Baetselier, P, Beyaert, R.
Targeting the EGF receptor ectodomain in the context of cancer
Expert Opin Ther Targets 11, 1347-1361, 2009. (Epub 2009 Sep 22)

Huibregtse, IL, Marietta, EV, Rashtak, S, Koning, F, Rottiers, P, David, CS, van Deventer, SJ, Murray, JA.
Induction of antigen-specific tolerance by oral administration of lactococcus lactis delivered immunodominant DQ8-restricted gliadin peptide in sensitized nonobese diabetic abdegrees Dq8 transgenic mice
J Immunol 183, 2390-6239, 2009. (Epub 2009 Jul 27)

Hulpiau, P, van Roy, F.
Molecular evolution of the cadherin superfamily
Int J Biochem Cell Biol 42, 349-369, 2009. (Epub 2008 Oct 4)

Huys, L, Van Hauwermeiren, F, Dejager, L, Dejonckheere, E, Lienenklaus, S, Weiss, S, Leclercq, G, Libert, C.
Type-I interferon drives tumor necrosis factor-induced lethal shock
J Exp Med 206, 1873-1882, 2009. (Epub 2009 Aug 17)

Jacobs, P, Callewaert, N.
N-glycosylation engineering of biopharmaceutical expression systems
Curr Mol Med 9, 774-800, 2009. (Epub ---)

Jacobs, P, Geysens, S, Vervecken, W, Contreras, R, Callewaert, N.
Engineering complex-type N-glycosylation in Pichia pastoris using GlycoSwitch technology
Nature Protocols 4, 58-70, 2009. (Epub 2008 Dec 18)

Korf, H, Vander Beken, S, Romano, M, Steffensen, KR, Stijlemans, B, Gustafsson, J-A, Grooten, J, Huygen, K.
Liver X receptors contribute to the protective immune response against Mycobacterium tuberculosis in mice
J Clin Invest 119, 1626-1637, 2009. (Epub 2009 May 11)

Kroemer, G, Galluzzi, L, Vandenabeele, P, Abrams, J, Alnemri, ES, Baehrecke, EH, Blagosklonny, MV, El-Deiry, WS, Golstein, P, Green, DR, Hengartner, M, Knight, RA, Kumar, S, Lipton, SA, Malorni, W, Nunez, G, Peter, ME, Tschopp, J, Yuan, J, et al..
Classification of cell death: recommendations of the Nomenclature Committee on Cell Death 2009
Cell Death Differ 16, 3-11, 2009. (Epub 2008 Oct 10)

Krysko, DV, Kaczmarek, A, Vandenabeele, P.
Molecular pathways of different types of cell death: many roads to death
In Phagocytosis of dying cells: from molecular mechanisms to human diseases. (Krysko, DV, Vandenabeele, P, eds.), Berlin, Springer., pp. 3-31, 2009. (Epub ---)

Krysko, DV, Vandenabeele, P. .
(editors)
Phagocytosis of dying cells: from molecular mechanisms to human diseases. , 447 pages, 2009. (Epub ---)

Laukens, D, Waeytens, A, De Bleser, P, Cuvelier, C, De Vos, M.
Human metallothionein expression under normal and pathological conditions: mechanisms of gene regulation based on in silico promoter analysis
Crit Rev Eukaryot Gene Expr 19, 301-317, 2009. (Epub ---)

Lee, KJ, Jung, JH, Lee, JM, So, YK, Kwon, O, Callewaert, N, Kang, HA, Ko, K, Oh, DB.
High-throughput quantitative analysis of plant N-glycan using a DNA sequencer
Biochem Biophys Res Commun 380, 223-229, 2009. (Epub 2009 Jan 21)

Lippens, S, Hoste, E, Vandenabeele, P, Agostinis, P, Declercq, W.
Cell death in the skin
Apoptosis 14, 549-569, 2009. (Epub 2009 Feb 17)

Loos, M, Remaut, E, Rottiers, P, De Creus, A.
Genetically engineered Lactococcus lactis secreting murine IL-10 modulates the functions of bone marrow-derived dendritic cells in the presence of LPS
Scand J Immunol 69, 130-139 , 2009. (Epub 2008 Dec 22)

Luthi, AU, Cullen, SP, McNeela, EA, Duriez, PJ, Afonina, IS, Sheridan, C, Brumatti, G, Taylor, RC, Kersse, K, Vandenabeele, P, Lavelle, EC, Martin, SJ.
Suppression of Interleukin-33 bioactivity through proteolysis by apoptotic caspases
Immunity 31, 84-98, 2009. (Epub 2009 Jun 24)

Luyer, MDP, Derikx, JPM, Beyaert, R, Hadfoune, M, Van Kuppevelt, TH, Cornelis, HC, Dejong, CHC, Heineman, E, Buurman, WA, Greve, JWM.
High-fat nutrition reduces hepatic damage following exposure to bacterial DNA and hemorrhagic shock
J Hepatol 50, 342-350, 2009. (Epub 2008 Nov 8)

Lyons, JP, Miller, RK, Zhou, X, Weidinger, G, Deroo, T, Denayer, T, Park, J-IJ, H., Hong, JY, Li, A, Moon, RT, Jones, EA, Vleminckx, K, Vize, PD, McCrea, PD.
Requirement of Wnt/beta-Catenin signaling in pronephric kidney development
Mech Develop 126, 142-159, 2009. (Epub 2008 Dec 7)

Marine, JC, Berx, G.
Transforming growth factor-beta and mutant p53 conspire to induce metastasis by antagonizing p63: a (ternary) complex affair
Breast Cancer Res 11, 304, 2009. (Epub ---)

Mattanovich, D, Callewaert, N, Rouze, P, Lin, Y-C, Graf, A, Redl, A, Tiels, P, Gasser, B, De Schutter, K.
Open access to sequence: Browsing the Pichia pastoris genome
Microbial Cell Factories 8, 53, 2009. (Epub 2009 Oct 16)

Momi, S, Falcinelli, E, Giannini, S, Ruggeri, L, Cecchetti, L, Corazzi, T, Libert, C, Gresele, P.
Loss of matrix metalloproteinase 2 in platelets reduces arterial thrombosis in vivo
J Exp Med 206, 2365-2379, 2009. (Epub 2009 Oct 5)

Mueller, AJ, Hoffmann, C, Galle, M, Van Den Broeke, A, Heikenwalder, M, Falter, L, Misselwitz, B, Kremer, M, Beyaert, R, Hardt, WD.
The S. typhimurium effector SopE induces Caspase-1 activation in stromal cells to initiate gut inflammation
Cell Host Microbe 6, 125-136, 2009. (Epub 2009 Aug 20)

Munoz, M, Heimesaat, M, Danker, K, Struck, D, Lohmann, U, Plickert, R, Bereswill, S, Fischer, A, Dunay, I, Wolk, K, Loddenkemper, C, Krell, H-W, Libert, C, Lund, L, Frey, O, Hoelscher, C, Iwakura, Y, Ghilardi, N, Ouyang, W, et al.
Interleukin (IL)-23 mediates Toxoplasma gondii-induced immunopathology in the gut via matrixmetalloproteinase-2 and IL-22 but independent of IL-17
J Exp Med 206, 3047-3059, 2009. (Epub 2009 Dec 7)

Nishida, T, Yu, JD, Minamishima, S, Sips, P, Searles, RJ, Buys, ES, Janssens, S, Brouckaert, P, Bloch, KD, Ichinose, F.
Impact of nitric oxide synthase 3 and soluble guanylate cyclase on the outcome of cardiac arrest and cardiopulmonary resuscitation in mice
Crit Care Med 37, 256-262, 2009. (Epub 2008 Nov 28)

Nyabi, O, Naessens, M, Haigh, K, Gembarska, A, Goossens, S, Maetens, M, De Clercq, S, Drogat, B, Haenebalcke, L, Bartunkova, S, De Vos, I, De Craene, B, Karimi, M, Berx, G, Nagy, A, Hilson, P, Marine, JC, Haigh, JJ.
Efficient mouse transgenesis using Gateway-compatible ROSA26 locus targeting vectors and F1 hybrid ES cells
Nucleic Acids Res 37, e55, 2009. (Epub ---)

Ovaere, P, Lippens, S, Vandenabeele, P, Declercq, W.
The emerging roles of serine protease cascades in the epidermis
Trends Biochem Sci 34, 453-463, 2009. (Epub 2009 Aug 31)

Remijsen, Q, Vandenabeele, P, Willems, J, Kuijpers, TW.
Reconstitution of protection against Aspergillus infection in chronic granulomatous disease (CGD)
Blood 114, 3497, 2009. (Epub 2009 Oct 15)

Remijsen, Q, Vanden Berghe, T, Parthoens, E, Asselbergh, B, Vandenabeele, P, Willems, J.
Inhibition of spontaneous neutrophil apoptosis by parabutoporin acts independently of NADPH oxidase inhibition but by lipid raft-dependent stimulation of Akt
J Leukoc Biol 85, 497-507, 2009. (Epub 2008 Dec 18)

Rivera-Gil, P, De Koker, S, De Geest, BG, Parak, WJ.
Intracellular processing of proteins mediated by biodegradable polyelectrolyte capsules
Nano Lett 9, 4398-4402, 2009. (Epub ---)

Roelandt, T, Giddelo, C, Heughebaert, C, Denecker, G, Hupe, M, Crumrine, D, Kusuma, A, Haftek, M, Roseeuw, D, Declercq, W, Feingold, KR, Elias, PM, Hachem, JP.
The "Caveolae Brake Hypothesis" and the Epidermal Barrier
J Invest Dermatol 129, 927-936, 2009. (Epub 2008 Nov 13)

Roose, K, Fiers, W, Saelens, X.
Pandemic preparedness: Toward a universal influenza vaccine
Drug News Perspect 22, 80-92, 2009. (Epub ---)

Schoonooghe, S, Kaigorodov, V, Zawisza, M, Dumolyn, C, Haustraete, J, Grooten, J, Mertens, N.
Efficient production of human bivalent and trivalent anti-MUC1 Fab-scFv antibodies in Pichia pastoris
BMC Biotechnol 9, 70, 2009. (Epub 2009 Aug 11)

Schotsaert, M, De Filette, M, Fiers, W, Saelens, X.
Universal M2 ectodomain-based influenza A vaccines: preclinical and clinical developments
Expert Rev Vaccines 8, 499-508, 2009. (Epub ---)

Staal, J, Dixelius, C.
Plant innate immunity
In Encyclopedia of Life Sciences. Chichester, Wiley & Sons, DOI: 10.1002/9780470015902.a0020114, 2009. (Epub 2009 Mar)

Tanaka, H, Kitakura, S, De Rycke, R, De Groodt, R, Friml, J.
Fluorescence Imaging-Based Screen Identifies ARF GEF Component of Early Endosomal Trafficking
Current Biology 19, 391-397, 2009. (Epub 2009 Mar 10)

Ulrichts, P, Lemmens, I, Lavens, D, Beyaert, R, Tavernier, J.
MAPPIT (Mammalian Protein-Protein Interaction Trap) analysis of early steps in Toll-Like receptor signalling
Methods Mol Biol 517, 133-144, 2009. (Epub ---)

Van Beneden, K, Coppieters, K, Laroy, W, De Keyser, F, Hoffman, IE, Van den Bosch, F, Vander Cruyssen, B, Drennan, M, Jacques, P, Rottiers, P, Verbruggen, G, Contreras, R, Callewaert, N, Elewaut, D.
Reversible changes in serum immunoglobulin galactosylation during the immune response and treatment of inflammatory auto-immune arthritis
Ann Rheum Dis 68, 1360-1365, 2009. (Epub 2008 Sep 4)

Van Cleemput, M, Heyerick, A, Libert, C, Swerts, K, Philippe, J, De Keukeleire, D, Haegeman, G, De Bosscher, K.
Hop bitter acids efficiently block inflammation independent of GRalpha, PPARalpha, or PPARgamma
Mol Nutr Food Res 53, 1143-1155 , 2009. (Epub 2009 Aug 4)

Van den Bossche, J, Bogaert, P, van Hengel, J, Guerin, CJ, Berx, G, Movahedi, K, Van den Bergh, R, Pereira-Fernandes, A, Geuns, JM, Pircher, H, Dorny, P, Grooten, J, De Baetselier, P, Van Ginderachter, JA.
Alternatively activated macrophages engage in homotypic and heterotypic interactions through IL-4 and polyamine-induced E-cadherin/catenin complexes
Blood 114, 4664-4674, 2009. (Epub 2009 Sep 2)

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