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Ratman, D, Mylka, V, Bougarne, N, Pawlak, M, Caron, S, Hennuyer, N, Paumelle, R, De Cauwer, L, Thommis, J, Rider, MH, Libert, C, Lievens, S, Tavernier, J, Staels, B, De Bosscher, K.
Chromatin recruitment of activated AMPK drives fasting response genes co-controlled by GR and PPARalpha
Nucleic Acids Res 15, 10539-10553, 2016. (Epub 2016 Aug 30)

Robajac, D, Vanhooren, V, Masnikosa, R, Mikovic, Z, Mandic, V, Libert, C, Nedic, O.
Preeclampsia transforms membrane N-glycome in human placenta
Exp Mol Pathol 100, 26-30, 2016. (Epub 2015 Dec 2)

Roels, J, Aelterman, J, De Vylder, J, Lippens, S, Luong, HQ, Guerin, CJ, Philips, W.
Image Degradation in Microscopic Images: Avoidance, Artifacts, and Solutions
Adv Anat Embryol Cell Biol 219, 41-67, 2016. (Epub 2016 May 21)

Roels, J, Aelterman, J, De Vylder, J, Luong, H, Saeys, Y, Philips, W.
Bayesian deconvolution of scanning electron microscopy images using point-spread function estimation and non-local regularization
IEEE Conference Publications , 443-447, 2016. (Epub 2016 Oct 18)

Roels, J, De Vylder, J, Aelterman, J, Lippens, S, Saeys, Y, Philips, W.
Superpixel Quality in Microscopy Images: The Impact of Noise & Denoising
XIV MEDITERRANEAN CONFERENCE ON MEDICAL AND BIOLOGICAL ENGINEERING AND COMPUTING 2016 57, 258-263, 2016. (Epub 2016)

Roels, J, De Vylder, J, Saeys, Y, Goossens, B, Philips, W.
Decreasing Time Consumption of Microscopy Image Segmentation Through Parallel Processing on the GPU
Advanced Concepts for Intelligent Vision Systems, Acivs 2016 10016, 147-159, 2016. (Epub 2016 Oct 21)

Ruyssinck, J, Demeester, P, Dhaene, T, Saeys, Y.
Netter: re-ranking gene network inference predictions using structural network properties
BMC Bioinformatics 17, 76, 2016. (Epub 2016 Feb 9)

Saeys, Y, Van Gassen, S, Lambrecht, BN.
Computational flow cytometry: helping to make sense of high-dimensional immunology data
Nat Rev Immunol 16, 449-462, 2016. (Epub 2016 Jun 20)

Scheenstra, MR, De Cuyper, IM, Branco-Madeira, F, de Bleser, P, Kool, M, Meinders, M, Hoogenboezem, M, Mul, E, Wolkers, MC, Salerno, F, Nota, B, Saeys, Y, Klarenbeek, S, van Ijcken, WF, Hammad, H, Philipsen, S, van den Berg, TK, Kuijpers, TW, Lambrecht, BN, et al..
GATA1-Deficient Dendritic Cells Display Impaired CCL21-Dependent Migration toward Lymph Nodes Due to Reduced Levels of Polysialic Acid
J Immunol 197, 4312-4324, 2016. (Epub 2016 Nov 4)

Scott, CL, Lambrecht, BN.
Conventional Dendritic Cells: Identification, Subsets, Development, and Functions
Reference Module in Biomedical Sciences: Encyclopedia of Immunobiology 3, 374383, 2016. (Epub 2016 May 9)

Scott, CL, Soen, B, Martens, L, Skrypek, N, Saelens, W, Taminau, J, Blancke, G, Van Isterdael, G, Huylebroeck, D, Haigh, J, Saeys, Y, Guilliams, M, Lambrecht, BN, Berx, G.
The transcription factor Zeb2 regulates development of conventional and plasmacytoid DCs by repressing Id2
J Exp Med 213, 897-911, 2016. (Epub 2016 May 16)

Scott, CL, Wright, PB, Milling, SW, Mowat, AM.
Isolation and Identification of Conventional Dendritic Cell Subsets from the Intestine of Mice and Men
Methods Mol Biol 1423, 101-118, 2016. (Epub 2016 May 4)

Scott, CL, Zheng, F, De Baetselier, P, Martens, L, Saeys, Y, De Prijck, S, Lippens, S, Abels, C, Schoonooghe, S, Raes, G, Devoogdt, N, Lambrecht, BN, Beschin, A, Guilliams, M.
Bone marrow-derived monocytes give rise to self-renewing and fully differentiated Kupffer cells
Nat Commun 7, 10321, 2016. (Epub 2016 Jan 27)

Seo, J, Lee, EW, Sung, H, Seong, D, Dondelinger, Y, Shin, J, Jeong, M, Lee, HK, Kim, JH, Han, SY, Lee, C, Seong, JK, Vandenabeele, P, Song, J.
CHIP controls necroptosis through ubiquitylation- and lysosome-dependent degradation of RIPK3
Nat Cell Biol 18, 291-302, 2016. (Epub 2016 Feb 22)

Sichien, D, Scott, CL, Martens, L, Vanderkerken, M, Van Gassen, S, Plantinga, M, Joeris, T, De Prijck, S, Vanhoutte, L, Vanheerswynghels, M, Van Isterdael, G, Toussaint, W, Madeira, FB, Vergote, K, Agace, WW, Clausen, BE, Hammad, H, Dalod, M, Saeys, Y, et al..
IRF8 Transcription Factor Controls Survival and Function of Terminally Differentiated Conventional and Plasmacytoid Dendritic Cells, Respectively
Immunity 45, 626-640, 2016. (Epub 2016 Sep 20)

Simon, S, Skupa, P, Viaene, T, Zwiewka, M, Tejos, R, Klima, P, Carna, M, Rolcik, J, De Rycke, R, Moreno, I, Dobrev, PI, Orellana, A, Zazimalova, E, Friml, J.
PIN6 auxin transporter at endoplasmic reticulum and plasma membrane mediates auxin homeostasis and organogenesis in Arabidopsis
New Phytologist 211, 65-74, 2016. (Epub 2016 May 31)

Sips, M, Krykbaeva, M, Diefenbach, TJ, Ghebremichael, M, Bowman, BA, Dugast, AS, Boesch, AW, Streeck, H, Kwon, DS, Ackerman, ME, Suscovich, TJ, Brouckaert, P, Schacker, TW, Alter, G.
Fc receptor-mediated phagocytosis in tissues as a potent mechanism for preventive and therapeutic HIV vaccine strategies
Mucosal Immunol 9, 1584-1595, 2016. (Epub 2016 Feb 17)

Sips, M, Liu, Q, Draghi, M, Ghebremichael, M, Berger, CT, Suscovich, TJ, Sun, Y, Walker, BD, Carrington, M, Altfeld, M, Brouckaert, P, De Jager, PL, Alter, G.
HLA-C levels impact natural killer cell subset distribution and function
Hum Immunol 77, 1147-1153, 2016. (Epub 2016 Aug 10)

Slowicka, K, Vereecke, L, McGuire, C, Sze, M, Maelfait, J, Kolpe, A, Saelens, X, Beyaert, R, van Loo, G.
Optineurin deficiency in mice is associated with increased sensitivity to Salmonella but does not affect proinflammatory NF-kappaB signaling
Eur J Immunol 46, 971-980, 2016. (Epub 2015 Dec 17)

Slowicka, K, Vereecke, L, van Loo, G.
Cellular Functions of Optineurin in Health and Disease
Trends Immunol 37, 621-633, 2016. (Epub 2016 Jul 29)

Smet, M, Pollard, C, De Beuckelaer, A, Van Hoecke, L, Vander Beken, S, De Koker, S, Dulayymi, JR, Huygen, K, Verschoor, J, Baird, MS, Grooten, J.
Mycobacterium tuberculosis-associated synthetic mycolates differentially exert immune stimulatory adjuvant activity
Eur J Immunol 46, 2149-2154, 2016. (Epub 2016 Jun 28)

Smet, M, Van Hoecke, L, De Beuckelaer, A, Vander Beken, S, Naessens, T, Vergote, K, Willart, M, Lambrecht, BN, Gustafsson, JA, Steffensen, KR, Grooten, J.
Cholesterol-sensing liver X receptors stimulate Th2-driven allergic eosinophilic asthma in mice
Immun Inflamm Dis 4, 350-361, 2016. (Epub 2016 Aug 2)

Staats, KA, Humblet-Baron, S, Bento-Abreu, A, Scheveneels, W, Nikolaou, A, Deckers, K, Lemmens, R, Goris, A, Van Ginderachter, JA, Van Damme, P, Hisatsune, C, Mikoshiba, K, Liston, A, Robberecht, W, Van Den Bosch, L.
Genetic ablation of IP3 receptor 2 increases cytokines and decreases survival of SOD1G93A mice
Hum Mol Genet 25, 3491-3499, 2016. (Epub 2016 Jul 4)

Steeland, S, Timmermans, S, Van Ryckeghem, S, Hulpiau, P, Saeys, Y, Van Montagu, M, Vandenbroucke, RE, Libert, C.
Efficient analysis of mouse genome sequences reveal many nonsense variants
Proc Natl Acad Sci U S A 113, 5670-5675, 2016. (Epub 2016 May 17)

Steeland, S, Vandenbroucke, RE, Libert, C.
Nanobodies as therapeutics: big opportunities for small antibodies
Drug Discov Today 21, 1076-1113, 2016. (Epub 2016 Apr 11)

Stijlemans, B, Brys, L, Korf, H, Bieniasz-Krzywiec, P, Sparkes, A, Vansintjan, L, Leng, L, Vanbekbergen, N, Mazzone, M, Caljon, G, Van Den Abbeele, J, Odongo, S, De Trez, C, Magez, S, Van Ginderachter, JA, Beschin, A, Bucala, R, De Baetselier, P.
MIF-Mediated Hemodilution Promotes Pathogenic Anemia in Experimental African Trypanosomosis
PLoS Pathog 12, e1005862, 2016. (Epub 2016 Sep 15)

Stijlemans, B, Caljon, G, Van den Abbeele, J, Van Ginderachter, JA, Magez, S, De Trez, C.
Immune Evasion Strategies of Trypanosoma brucei within the Mammalian Host: Progression to Pathogenicity
Frontiers in Immunology 7, 233, 2016. (Epub 2016 Jun 24)

Storck, SE, Meister, S, Nahrath, J, Meissner, JN, Schubert, N, Di Spiezio, A, Baches, S, Vandenbroucke, RE, Bouter, Y, Prikulis, I, Korth, C, Weggen, S, Heimann, A, Schwaninger, M, Bayer, TA, Pietrzik, CU.
Endothelial LRP1 transports amyloid-beta1-42 across the blood-brain barrier
J Clin Invest 126, 123-136, 2016. (Epub 2015 Nov 30)

Stremersch, S, Vandenbroucke, RE, Van Wonterghem, E, Hendrix, A, De Smedt, SC, Raemdonck, K.
Comparing exosome-like vesicles with liposomes for the functional cellular delivery of small RNAs
J Control Release 232, 51-61, 2016. (Epub 2016 Apr 9)

Thyrion, L, Raedt, R, Portelli, J, Van Loo, P, Wadman, WJ, Glorieux, G, Lambrecht, BN, Janssens, S, Vonck, K, Boon, P.
Uric acid is released in the brain during seizure activity and increases severity of seizures in a mouse model for acute limbic seizures
Exp Neurol 277, 244-251, 2016. (Epub 2016 Jan 8)

Ting, AT, Bertrand, MJ.
More to Life than NF-kappaB in TNFR1 Signaling
Trends Immunol 37, 535-545, 2016. (Epub 2016 Jul 13)

Tortola, L, Nitsch, R, Bertrand, MJ, Kogler, M, Redouane, Y, Kozieradzki, I, Uribesalgo, I, Fennell, LM, Daugaard, M, Klug, H, Wirnsberger, G, Wimmer, R, Perlot, T, Sarao, R, Rao, S, Hanada, T, Takahashi, N, Kernbauer, E, Vandenabeele, P, et al..
The Tumor Suppressor Hace1 Is a Critical Regulator of TNFR1-Mediated Cell Fate
Cell Rep 15, 1481-1492, 2016. (Epub 2016 May 17)

Triguero, I, Vens, C.
Labelling strategies for hierarchical multi-label classification techniques
Pattern Recognition 56, 170-183, 2016. (Epub 2016 Mar 4)

Trypsteen, W, Mohammadi, P, Van Hecke, C, Mestdagh, P, Lefever, S, Saeys, Y, De Bleser, P, Vandesompele, J, Ciuffi, A, Vandekerckhove, L, De Spiegelaere, W.
Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay
Sci Rep 6, 36111, 2016. (Epub 2016 Oct 26)

Ugalde, JM, Rodriguez-Furlan, C, De Rycke, R, Norambuena, L, Friml, J, Leon, G, Tejos, R.
Phosphatidylinositol 4-phosphate 5-kinases 1 and 2 are involved in the regulation of vacuole morphology during Arabidopsis thaliana pollen development
Plant Science 250, 10-19, 2016. (Epub 2016 Sep)

Van Acker, A, Louagie, E, Filtjens, J, Taveirne, S, Van Ammel, E, Kerre, T, Elewaut, D, Taghon, T, Vandekerckhove, B, Plum, J, Leclercq, G.
The role of Ly49E receptor expression on murine intraepithelial lymphocytes in intestinal cancer development and progression
Cancer Immunol Immunother 65, 1365-1375, 2016. (Epub 2016 Sep 1)

Van Cauwenberghe, C, Vandendriessche, C, Libert, C, Vandenbroucke, RE.
Caloric restriction: beneficial effects on brain aging and Alzheimer's disease
Mamm Genome 27, 300-319, 2016. (Epub 2016 May 30)

van de Laar, L, Guilliams, M, Tavernier, SJ.
Isolation of Conventional Dendritic Cells from Mouse Lungs
Methods Mol Biol 1423, 139-152, 2016. (Epub 2016 May 4)

van de Laar, L, Saelens, W, De Prijck, S, Martens, L, Scott, CL, Van Isterdael, G, Hoffmann, E, Beyaert, R, Saeys, Y, Lambrecht, BN, Guilliams, M.
Yolk Sac Macrophages, Fetal Liver, and Adult Monocytes Can Colonize an Empty Niche and Develop into Functional Tissue-Resident Macrophages
Immunity 44, 755-768, 2016. (Epub 2016 Apr 19)

Vandenabeele, P, Vandecasteele, K, Bachert, C, Krysko, O, Krysko, DV.
Immunogenic Apoptotic Cell Death and Anticancer Immunity
Adv Exp Med Biol 930, 133-149, 2016. (Epub 2016 Aug 25)

Vanden Berghe, T, Hassannia, B, Vandenabeele, P.
An outline of necrosome triggers
Cell Mol Life Sci 73, 2137-2152, 2016. (Epub 2016 Apr 6)

Vandenbroucke, RE.
A Hidden Epithelial Barrier in the Brain with a Central Role in Regulating Brain Homeostasis. Implications for Aging
Ann Am Thorac Soc 13, S407-S410, 2016. (Epub 2016 Dec 13)

van der Zwaag, D, Vanparijs, N, Wijnands, S, De Rycke, R, De Geest, BG, Albertazzi, L.
Super Resolution Imaging of Nanoparticles Cellular Uptake and Trafficking
ACS Appl Mater Interfaces 8, 6391-6399, 2016. (Epub 2016 Mar)

Vande Walle, L, Jimenez Fernandez, D, Demon, D, Van Laethem, N, Van Hauwermeiren, F, Van Gorp, H, Van Opdenbosch, N, Kayagaki, N, Lamkanfi, M.
Does caspase-12 suppress inflammasome activation?
Nature 534, E1-4, 2016. (Epub 2016 Jun 2)

Vande Walle, L, Lamkanfi, M.
Pyroptosis
Curr Biol 26, R568-R572, 2016. (Epub 2016 Jul 11)

Van de Wiele, T, Van Praet, JT, Marzorati, M, Drennan, MB, Elewaut, D.
How the microbiota shapes rheumatic diseases
Nat Rev Rheumatol 12, 398-411, 2016. (Epub 2016 Jun 16)

Van Dingenen, J, De Milde, L, Vermeersch, M, Maleux, K, De Rycke, R, De Bruyne, M, Storme, V, Gonzalez, N, Dhondt, S, Inze, D.
Chloroplasts Are Central Players in Sugar-Induced Leaf Growth
Plant Physiology 171, 590-605, 2016. (Epub 2016 May)

Van Gassen, S, Dhaene, T, Saeys, Y.
Machine Learning Challenges for Single Cell Data
Machine Learning and Knowledge discovery in databases 9853, 275-279, 2016. (Epub 2016 Sep)

Van Gassen, S, Vens, C, Dhaene, T, Lambrecht, BN, Saeys, Y.
FloReMi: Flow density survival regression using minimal feature redundancy
Cytometry A 89A, 22-29, 2016. (Epub 2015 Aug 4)

Van Gorp, H, Saavedra, PH, de Vasconcelos, NM, Van Opdenbosch, N, Vande Walle, L, Matusiak, M, Prencipe, G, Insalaco, A, Van Hauwermeiren, F, Demon, D, Bogaert, DJ, Dullaers, M, De Baere, E, Hochepied, T, Dehoorne, J, Vermaelen, KY, Haerynck, F, De Benedetti, F, Lamkanfi, M.
Familial Mediterranean fever mutations lift the obligatory requirement for microtubules in Pyrin inflammasome activation
Proc Natl Acad Sci U S A 113, 14384-14389, 2016. (Epub 2016 Nov 22)

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