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Van Dingenen, J, De Milde, L, Vermeersch, M, Maleux, K, De Rycke, R, De Bruyne, M, Storme, V, Gonzalez, N, Dhondt, S, Inze, D.
Chloroplasts Are Central Players in Sugar-Induced Leaf Growth
Plant Physiology 171, 590-605, 2016. (Epub 2016 May)

Van Gassen, S, Dhaene, T, Saeys, Y.
Machine Learning Challenges for Single Cell Data
Machine Learning and Knowledge discovery in databases 9853, 275-279, 2016. (Epub 2016 Sep)

Van Gassen, S, Vens, C, Dhaene, T, Lambrecht, BN, Saeys, Y.
FloReMi: Flow density survival regression using minimal feature redundancy
Cytometry A 89A, 22-29, 2016. (Epub 2015 Aug 4)

Van Gorp, H, Saavedra, PH, de Vasconcelos, NM, Van Opdenbosch, N, Vande Walle, L, Matusiak, M, Prencipe, G, Insalaco, A, Van Hauwermeiren, F, Demon, D, Bogaert, DJ, Dullaers, M, De Baere, E, Hochepied, T, Dehoorne, J, Vermaelen, KY, Haerynck, F, De Benedetti, F, Lamkanfi, M.
Familial Mediterranean fever mutations lift the obligatory requirement for microtubules in Pyrin inflammasome activation
Proc Natl Acad Sci U S A 113, 14384-14389, 2016. (Epub 2016 Nov 22)

Van Hauwermeiren, F, Lamkanfi, M.
The NEK-sus of the NLRP3 inflammasome
Nat Immunol 17, 223-224, 2016. (Epub 2016 Feb 16)

van Hengel, J, Van den Broeke, C, Pieters, T, Libbrecht, L, Hofmann, I, van Roy, F.
Inactivation of p120 catenin in mice disturbs intrahepatic bile duct development and aggravates liver carcinogenesis
Eur J Cell Biol 95, 574-584, 2016. (Epub 2016 Oct 15)

Van Hove, I, Lefevere, E, De Groef, L, Sergeys, J, Salinas-Navarro, M, Libert, C, Vandenbroucke, R, Moons, L.
MMP-3 Deficiency Alleviates Endotoxin-Induced Acute Inflammation in the Posterior Eye Segment
Int J Mol Sci 17, E1825, 2016. (Epub 2016 Nov 1)

Van Overmeire, E, Stijlemans, B, Heymann, F, Keirsse, J, Morias, Y, Elkrim, Y, Brys, L, Abels, C, Lahmar, Q, Ergen, C, Vereecke, L, Tacke, F, De Baetselier, P, Van Ginderachter, JA, Laoui, D.
M-CSF and GM-CSF Receptor Signaling Differentially Regulate Monocyte Maturation and Macrophage Polarization in the Tumor Microenvironment
Cancer Res 76, 35-42, 2016. (Epub 2016 Jan 1)

Varkas, G, Jans, L, Cypers, H, Van Praet, L, Carron, P, Elewaut, D, Van den Bosch, F.
Six-week treatment of axial spondyloarthritis patients with an optimal dose of NSAIDs: early response to treatment in signal intensity on magnetic resonance imaging of the sacroiliac joints
Arthritis Rheumatol 68, 672-678, 2016. (Epub 2015 Oct 16)

Varkas, G, Van den Bosch, F.
NSAIDs in axial spondyloarthritis: to be continued...?
Ann Rheum Dis 75, 1423-1425, 2016. (Epub 2016 Aug)

Verbiest, N, Vluymans, S, Cornelis, C, Garcia-Pedrajas, N, Saeys, Y.
Improving nearest neighbor classification using Ensembles of Evolutionary Generated Prototype Subsets
Applied Soft Computing 44, 75-88, 2016. (Epub 2016 Apr 6)

Verstraeten, B, van Hengel, J, Huysseune, A.
Beta-Catenin and Plakoglobin Expression during Zebrafish Tooth Development and Replacement
PLoS One 11, e0148114, 2016. (Epub 2016 Mar 3)

Vlantis, K, Polykratis, A, Welz, PS, van Loo, G, Pasparakis, M, Wullaert, A.
TLR-independent anti-inflammatory function of intestinal epithelial TRAF6 signalling prevents DSS-induced colitis in mice
Gut 65, 935-943, 2016. (Epub 2015 Mar 11)

Vlantis, K, Wullaert, A, Polykratis, A, Kondylis, V, Dannappel, M, Schwarzer, R, Welz, P, Corona, T, Walczak, H, Weih, F, Klein, U, Kelliher, M, Pasparakis, M.
NEMO Prevents RIP Kinase 1-Mediated Epithelial Cell Death and Chronic Intestinal Inflammation by NF-kappaB-Dependent and -Independent Functions
Immunity 44, 553-567, 2016. (Epub 2016 Mar 15)

Vluymans, S, Mac Parthalain, N, Cornelis, C, Saeys, Y.
Fuzzy Rough Sets for Self-Labelling: an Exploratory Analysis
Proceedings of the 2016 IEEE International Conference on Fuzzy Systems , 931-938, 2016. (Epub 2016)

Vluymans, S, Sánchez Tarragó, D, Saeys, Y, Cornelis, C, Herrera, F.
Fuzzy Multi-Instance Classifiers
IEEE Transactions on Fuzzy Systems 24, 1395-1409, 2016. (Epub Dec 2016)

Vluymans, S, Tarrago, DS, Saeys, Y, Cornelis, C, Herrera, F.
Fuzzy rough classifiers for class imbalanced multi-instance data
Pattern Recognition 53, 36-45, 2016. (Epub 2015 Dec 12)

Vluymans, S, Triguero, I, Cornelis, C, Saeys, Y.
EPRENNID: An evolutionary prototype reduction based ensemble for nearest neighbor classification of imbalanced data
Neurocomputing 216, 596-610, 2016. (Epub 2016 Aug 11)

Xiong, R, Joris, F, Liang, S, De Rycke, R, Lippens, S, Demeester, J, Skirtach, A, Raemdonck, K, Himmelreich, U, De Smedt, SC, Braeckmans, K.
Cytosolic Delivery of Nanolabels Prevents Their Asymmetric Inheritance and Enables Extended Quantitative in Vivo Cell Imaging
Nano Lett 16, 5975-5986, 2016. (Epub 2016 Oct 3)

Xiong, R, Vandenbroucke, RE, Broos, K, Brans, T, Van Wonterghem, E, Libert, C, Demeester, J, De Smedt, SC, Braeckmans, K.
Sizing nanomaterials in bio-fluids by cFRAP enables protein aggregation measurements and diagnosis of bio-barrier permeability
Nat Commun 7, 12982, 2016. (Epub 2016 Sep 22)

Yang, Y, Andersson, P, Hosaka, K, Zhang, Y, Cao, R, Iwamoto, H, Yang, X, Nakamura, M, Wang, J, Zhuang, R, Morikawa, H, Xue, Y, Braun, H, Beyaert, R, Samani, N, Nakae, S, Hams, E, Dissing, S, Fallon, PG, et al..
The PDGF-BB-SOX7 axis-modulated IL-33 in pericytes and stromal cells promotes metastasis through tumour-associated macrophages
Nat Commun 7, 11385, 2016. (Epub 2016 May 6)

Zhakupova, A, Debeuf, N, Krols, M, Toussaint, W, Vanhoutte, L, Alecu, I, Kutalik, Z, Vollenweider, P, Ernst, D, von Eckardstein, A, Lambrecht, BN, Janssens, S, Hornemann, T.
ORMDL3 expression levels have no influence on the activity of serine palmitoyltransferase
FASEB J 30, 4289-4300, 2016. (Epub 206 Sep 19)

Zhang, Z, Maji, S, da Fonseca Antunes, AB, De Rycke, R, Hoogenboom, R, De Geest, BG.
Salt-Driven Deposition of Thermoresponsive Polymer-Coated Metal Nanoparticles on Solid Substrates
Angew Chem Int Ed Engl 55, 7086-7090, 2016. (Epub 2016 Jun 13)

Zhang, Z, Schepens, B, Nuhn, L, Saelens, X, Schotsaert, M, Callewaert, N, De Rycke, R, Zhang, Q, Moins, S, Benali, S, Mespouille, L, Hoogenboom, R, De Geest, BG.
Influenza-binding sialylated polymer coated gold nanoparticles prepared via RAFT polymerization and reductive amination
Chem Commun (Camb) 52, 3352-3355, 2016. (Epub 2016 Jan 29)

Aerts, J, Vandenbroucke, RE, Dera, R, Balusu, S, Van Wonterghem, E, Moons, L, Libert, C, Dehaen, W, Arckens, L.
Synthesis and Validation of a Hydroxypyrone-Based, Potent, and Specific Matrix Metalloproteinase-12 Inhibitor with Anti-Inflammatory Activity In Vitro and In Vivo
Mediators Inflamm 2015, 510679, 2015. (Epub 2015 Aug 13)

Afonina, IS, Elton, L, Carpentier, I, Beyaert, R.
MALT1 - a universal soldier: multiple strategies to ensure NF-kappaB activation and target gene expression
FEBS J 282, 3286-3297, 2015. (Epub 2015 May 21)

Afonina, IS, Muller, C, Martin, SJ, Beyaert, R.
Proteolytic Processing of Interleukin-1 Family Cytokines: Variations on a Common Theme
Immunity 42, 991-1004, 2015. (Epub 2015 Jun 16)

Allais, L, Kumar, S, Debusschere, K, Verschuere, S, Maes, T, De Smet, R, Conickx, G, De Vos, M, Laukens, D, Joos, GF, Brusselle, GG, Elewaut, D, Cuvelier, CA, Bracke, KR.
The Effect of Cigarette Smoke Exposure on the Development of Inflammation in Lungs, Gut and Joints of TNFDeltaARE Mice
PLoS One 10, e0141570, 2015. (Epub 2015 Nov 2)

Alloatti, A, Kotsias, F, Pauwels, AM, Carpier, JM, Jouve, M, Timmerman, E, Pace, L, Vargas, P, Maurin, M, Gehrmann, U, Joannas, L, Vivar, OI, Lennon-Dumenil, AM, Savina, A, Gevaert, K, Beyaert, R, Hoffmann, E, Amigorena, S.
Toll-like Receptor 4 Engagement on Dendritic Cells Restrains Phago-Lysosome Fusion and Promotes Cross-Presentation of Antigens
Immunity 43, 1087-1100, 2015. (Epub 2015 Dec 15)

Anastasina, M, Schepens, B, Soderholm, S, Nyman, TA, Matikainen, S, Saksela, K, Saelens, X, Kainov, DE.
The C-terminus of NS1 protein of influenza A/WSN/1933(H1N1) virus modulates antiviral responses in infected human macrophages and mice
J Gen Virol 96, 2086-2091, 2015. (Epub 2015 May 1)

Andries, V, Vandepoele, K, Staes, K, Berx, G, Bogaert, P, Van Isterdael, G, Ginneberge, D, Parthoens, E, Vandenbussche, J, Gevaert, K, van Roy, F.
NBPF1, a tumor suppressor candidate in neuroblastoma, exerts growth inhibitory effects by inducing a G1 cell cycle arrest
BMC Cancer 15, 391, 2015. (Epub 2015 May 10)

Babu, D, Leclercq, G, Goossens, V, Remijsen, Q, Vandenabeele, P, Motterlini, R, Lefebvre, RA.
Antioxidant potential of CORM-A1 and resveratrol during TNF-alpha/cycloheximide-induced oxidative stress and apoptosis in murine intestinal epithelial MODE-K cells
Toxicol Appl Pharmacol , in press, 2015. (Epub 2015 Jul 14)

Babu, D, Leclercq, G, Goossens, V, Vanden Berghe, T, Van Hamme, E, Vandenabeele, P, Lefebvre, RA.
Mitochondria and NADPH oxidases are the major sources of TNF-alpha/cycloheximide-induced oxidative stress in murine intestinal epithelial MODE-K cells
Cell Signal 27, 1141-1158, 2015. (Epub 2015 Feb 26)

Baert, K, de Geest, BG, de Rycke, R, Antunes, ABD, de Greve, H, Cox, E, Devriendt, B.
beta-glucan microparticles targeted to epithelial APN as oral antigen delivery system
Journal of Controlled Release 220, 149-159, 2015. (Epub 2015 Dec 28)

Ballantyne, LL, Sin, YY, St Amand, T, Si, J, Goossens, S, Haenebalcke, L, Haigh, JJ, Kyriakopoulou, L, Schulze, A, Funk, CD.
Strategies to rescue the consequences of inducible arginase-1 deficiency in mice
PLoS One 10, e0125967, 2015. (Epub 2015 May 4)

Bibli, SI, Andreadou, I, Chatzianastasiou, A, Tzimas, C, Sanoudou, D, Kranias, E, Brouckaert, P, Coletta, C, Szabo, C, Kremastinos, DT, Iliodromitis, EK, Papapetropoulos, A.
Cardioprotection by H2S engages a cGMP-dependent protein kinase G/phospholamban pathway
Cardiovasc Res 106, 432-442, 2015. (Epub 2015 Apr 13)

Bontempi, IA, Vicco, MH, Cabrera, G, Villar, SR, Gonzalez, FB, Roggero, EA, Ameloot, P, Callewaert, N, Perez, AR, Marcipar, IS.
Efficacy of a trans-sialidase-ISCOMATRIX subunit vaccine candidate to protect against experimental Chagas disease
Vaccine 33, 1274-1283, 2015. (Epub 2015 Jan 25)

Borelli, V, Vanhooren, V, Lonardi, E, Reiding, KR, Capri, M, Libert, C, Garagnani, P, Salvioli, S, Franceschi, C, Wuhrer, M.
Plasma N-Glycome Signature of Down Syndrome
Journal of proteome research 14, 4232-4245, 2015. (Epub 2015 Sep 14)

Bousquet, J, Anto, JM, Wickman, M, Keil, T, Valenta, R,et al., Lambrecht, BN, et al., Hammad, H, et al., Saeys, Y, Akdis, M, Auffray, C, Annesi-Maesano, I, Bindslev-Jensen, C, Cambon-Thomsen, A, Carlsen, KH, Chatzi, L, Forastiere, F, Garcia-Aymerich, J, et al..
Are allergic multimorbidities and IgE polysensitization associated with the persistence or re-occurrence of foetal Type 2 signalling? The MeDALL hypothesis
Allergy 70, 1062-1078, 2015. (Epub 2015 Apr 24)

Bousquet, J, Schunemann, HJ, Fonseca, J, Samolinski, B, Bachert, C, Canonica, GW, Casale, T, Cruz, AA, Demoly, P, Hellings, P, Valiulis, A, Wickman, M, Zuberbier, T, Bosnic-Anticevitch, S, Bedbrook, A, Bergmann, KC, Lambrecht, BN, Dahl, R, Fokkens, WJ, et al..
MACVIA-ARIA Sentinel NetworK for allergic rhinitis (MASK-rhinitis): The new generation guideline implementation
Allergy 70, 1372-1392, 2015. (Epub 2015 Jul 4)

Boutaffala, L, Bertrand, MJ, Remouchamps, C, Seleznik, G, Reisinger, F, Janas, M, Benezech, C, Fernandes, MT, Marchetti, S, Mair, F, Ganeff, C, Hupalowska, A, Ricci, JE, Becher, B, Piette, J, Knolle, P, Caamano, J, Vandenabeele, P, Heikenwalder, M, Dejardin, E.
NIK promotes tissue destruction independently of the alternative NF-kappaB pathway through TNFR1/RIP1-induced apoptosis
Cell Death Differ 22, 2020-2033, 2015. (Epub 2015 Jun 5)

Brkic, M, Balusu, S, Libert, C, Vandenbroucke, RE.
Friends or Foes: Matrix Metalloproteinases and Their Multifaceted Roles in Neurodegenerative Diseases
Mediators Inflamm 2015, 620581, 2015. (Epub 2015 Oct 11)

Brkic, M, Balusu, S, Van Wonterghem, E, Gorle, N, Benilova, I, Kremer, A, Van Hove, I, Moons, L, De Strooper, B, Kanazir, S, Libert, C, Vandenbroucke, RE.
Amyloid beta Oligomers Disrupt Blood-CSF Barrier Integrity by Activating Matrix Metalloproteinases
J Neurosci 35, 12766-78, 2015. (Epub 2015 Sep 16)

Broos, CE, van Nimwegen, M, Kleinjan, A, Ten Berge, B, Muskens, F, In 't Veen, JC, Annema, JT, Lambrecht, BN, Hoogsteden, HC, Hendriks, RW, Kool, M, van den Blink, B.
Impaired survival of regulatory T cells in pulmonary sarcoidosis
Respir Res 16, 108, 2015. (Epub 2015 Sep 16)

Burkle, A, Moreno-Villanueva, M, Bernhard, J, Blasco, M, Zondag, G, Hoeijmakers, JH, Toussaint, O, Grubeck-Loebenstein, B, Mocchegiani, E, Collino, S, Gonos, ES, Sikora, E, Gradinaru, D, Dolle, M, Salmon, M, Kristensen, P, Griffiths, HR, Libert, C, Grune, T, et al..
MARK-AGE biomarkers of ageing
Mech Ageing Dev 151, 2-12, 2015. (Epub 2015 Mar 24)

Catrysse, L, Fukaya, M, Sze, M, Meyerovich, K, Beyaert, R, Cardozo, AK, van Loo, G.
A20 deficiency sensitizes pancreatic beta cells to cytokine-induced apoptosis in vitro but does not influence type 1 diabetes development in vivo
Cell Death Dis 6, e1918, 2015. (Epub 2015 Oct 15)

Cerini, F, Gaertner, H, Madden, K, Tolstorukov, I, Brown, S, Laukens, B, Callewaert, N, Harner, JC, Oommen, AM, Harms, JT, Sump, AR, Sealock, RC, Peterson, DJ, Johnson, SK, Abramson, SB, Meagher, M, Offord, R, Hartley, O.
A scalable low-cost cGMP process for clinical grade production of the HIV inhibitor 5P12-RANTES in Pichia pastoris
Protein Expr Purif 119, 1-10, 2015. (Epub 2015 Oct 23)

Cho, KJ, Schepens, B, Moonens, K, Deng, L, Fiers, W, Remaut, H, Saelens, X.
Crystal structure of the conserved amino-terminus of the extracellular domain of matrix protein 2 of influenza A virus gripped by an antibody
J Virol 90, 611-615, 2015. (Epub 2015 Oct 14)

Cho, KJ, Schepens, B, Seok, JH, Kim, S, Roose, K, Lee, JH, Gallardo, R, Van Hamme, E, Schymkowitz, J, Rousseau, F, Fiers, W, Saelens, X, Kim, KH.
Structure of the Extracellular Domain of Matrix Protein 2 of Influenza A Virus in Complex with a Protective Monoclonal Antibody
J Virol 89, 3700-3711, 2015. (Epub 2015 Jan 21)

Claes, K, Guerfal, M, Callewaert, N.
Membrane protein expression and analysis in yeast
Methods Enzymol 556, 123-140, 2015. (Epub 2015 Mar 20)

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